View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5332_low_3 (Length: 454)
Name: NF5332_low_3
Description: NF5332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5332_low_3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 255 - 454
Target Start/End: Complemental strand, 28070255 - 28070056
Alignment:
| Q |
255 |
tgattcgttcaacttgaacaagaatttgtgactgcatgatcatgtttatcaacnnnnnnncaagaaagggcatgatgaatgaatacaattctaaataaaa |
354 |
Q |
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| T |
28070255 |
tgattcgttcaacttgaacaagaatttgtgactgcatgatcatgtttatcaacaaaaaaacaagaaagggcatgatcaatgaatacaattctaaataaaa |
28070156 |
T |
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| Q |
355 |
agaaaagggttgtcgtgaaaatattattagtattgtaacaaagatgagaatgaatgaatgtacgtacctggtaaccaaggagaaaaagaagggtcaaaat |
454 |
Q |
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| T |
28070155 |
agaaaagggttgtcgtgaaaatattattagtattgtaacaaagatgagaatgaatgaatgtacgtacctggtaaccaaggagaacaagaagggtcaaaat |
28070056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 28070497 - 28070327
Alignment:
| Q |
11 |
taatacttgatggacaccagacacaccttagatcataagtgttggtgcaaattaaacatttgataaactagacattatatccaattgcctatttaatttt |
110 |
Q |
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| T |
28070497 |
taatacttgttggacaccagacacaccttagatcataagtgttggtgcaaattaaacatttgataaactagacattatatccaattgcctatttaatttt |
28070398 |
T |
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| Q |
111 |
ccaattgaaatttcatgtccttataccctcaattaaatcgcttattcaactatataaacatttctttttgt |
181 |
Q |
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| T |
28070397 |
ccaattgaaatttcatgtccttataccctcaattaaatcgcttattcaactatataaacatttctttttgt |
28070327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 46550786 - 46550749
Alignment:
| Q |
21 |
tggacaccagacacaccttagatcataagtgttggtgc |
58 |
Q |
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| T |
46550786 |
tggacaccagacacaccttcgatcataagtgttggtgc |
46550749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 10033321 - 10033357
Alignment:
| Q |
22 |
ggacaccagacacaccttagatcataagtgttggtgc |
58 |
Q |
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| T |
10033321 |
ggacaccagacacaccttcgatcaaaagtgttggtgc |
10033357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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