View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5332_low_5 (Length: 373)
Name: NF5332_low_5
Description: NF5332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5332_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 3857673 - 3857497
Alignment:
| Q |
23 |
catcacctttcacttgtatttgtgatgtgtataagccaagagagttcataggttgaaaatatttgattgcatcctcatactcaaatgactgaatggttgt |
122 |
Q |
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| T |
3857673 |
catcacctttcacttgtatttgtgatgtgtataagccaagagagttcataggttgaaaatatttgattgcatcctcatactcaaatgactgaatggctgt |
3857574 |
T |
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| Q |
123 |
cttctcaatatttgtacattcaaactttttacaattatctttgacatgatgaattttcaatgatgatttcatctggc |
199 |
Q |
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| T |
3857573 |
cttctcaatatttgtacattcaaactttttacaattatctttgacatgatgaattttcaatgatgatttcatctggc |
3857497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 3866430 - 3866254
Alignment:
| Q |
23 |
catcacctttcacttgtatttgtgatgtgtataagccaagagagttcataggttgaaaatatttgattgcatcctcatactcaaatgactgaatggttgt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3866430 |
catcacctttcacttgtatttgtgatgtgtataagccaagagagttcataggttgaaaatatttgattgcatcctcatactcaaatgactgaatggctgt |
3866331 |
T |
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| Q |
123 |
cttctcaatatttgtacattcaaactttttacaattatctttgacatgatgaattttcaatgatgatttcatctggc |
199 |
Q |
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| T |
3866330 |
cttctcaatatttgtacattcaaactttttacaattatctttgacatgatgaattttcaatgatgatttcatctggc |
3866254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 258 - 361
Target Start/End: Complemental strand, 3857438 - 3857335
Alignment:
| Q |
258 |
gtagtaaagttgaaggtatatcaaatattaaggatgcctaatgaccatgttatcacttggatattaatttggttattgttaagtttaaactgaggtagta |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3857438 |
gtagtaaagttgaaggtatatcaaatattaaggatgcctaatgaccatgttatcacttggatattaatttggttattgttaagtttaaactgaggtagta |
3857339 |
T |
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| Q |
358 |
tatg |
361 |
Q |
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|||| |
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| T |
3857338 |
tatg |
3857335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 258 - 361
Target Start/End: Complemental strand, 3866195 - 3866092
Alignment:
| Q |
258 |
gtagtaaagttgaaggtatatcaaatattaaggatgcctaatgaccatgttatcacttggatattaatttggttattgttaagtttaaactgaggtagta |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3866195 |
gtagtaaagttgaaggtatatcaaatattaaggatgcctaatgaccatgttatcacttggatattaatttggttattgttaagtttaaactgaggtagta |
3866096 |
T |
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| Q |
358 |
tatg |
361 |
Q |
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|||| |
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| T |
3866095 |
tatg |
3866092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 5440458 - 5440537
Alignment:
| Q |
68 |
tcataggttgaaaatatttgattgcatcctcatactcaaatgactgaatggttgtcttctcaatatttgtacattcaaac |
147 |
Q |
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|||||||| ||||| |||||||||||| |||| || ||||||| | || ||||||||| |||||||||||||||||| |
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| T |
5440458 |
tcataggtggaaaagatttgattgcattctcaggctgaaatgaccggataactgtcttctctatatttgtacattcaaac |
5440537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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