View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5332_low_7 (Length: 348)
Name: NF5332_low_7
Description: NF5332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5332_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 40617162 - 40617487
Alignment:
| Q |
1 |
ccttgaacctccactgtaccatccagtcgataatgccacgattctttctgagttgctatggaatatctcatcgcactgagaagcacctcctccgtctcct |
100 |
Q |
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| T |
40617162 |
ccttgaacctccactgtaccatccagtcgataatgccacgattctttccgagttgctatggaatatctcatcgcactgagaagcacctcctccgtctcct |
40617261 |
T |
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| Q |
101 |
cctgttaaatatagtttgagatttattaaaattaattagttgaatattatttaaggtagttacaagtttgctnnnnnnnnnngaggtagttacaagttag |
200 |
Q |
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| T |
40617262 |
cctgttaaatatagtttgagatttattaaaattaattatttgaatattatttaaggtagttacaagtttgctaaaaaaaaaagaggtagttacaagttag |
40617361 |
T |
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| Q |
201 |
ttataatcacttgaaagttagttatatatgttacctgcgctaaaatcgttcaaagtgagtaatgcttgtgtgccggaggatacatagggtggagaacacc |
300 |
Q |
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| T |
40617362 |
ttataatcacttgatagttagttatatatgttacctgcgctaaaatcgttcaaagtgagtaatgcttgtgtgccggaggatacatagggtggagaacacc |
40617461 |
T |
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| Q |
301 |
tatattgagggtatgattgtccatcg |
326 |
Q |
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| T |
40617462 |
tatattgagggtatgattgtccatcg |
40617487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Original strand, 40628024 - 40628054
Alignment:
| Q |
288 |
ggtggagaacacctatattgagggtatgatt |
318 |
Q |
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| T |
40628024 |
ggtggagaacacctatattgagggtatgatt |
40628054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 165
Target Start/End: Original strand, 44565151 - 44565182
Alignment:
| Q |
134 |
aattagttgaatattatttaaggtagttacaa |
165 |
Q |
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| T |
44565151 |
aattagttgaatattatttaaggtagttacaa |
44565182 |
T |
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