View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5332_low_9 (Length: 331)
Name: NF5332_low_9
Description: NF5332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5332_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 41705724 - 41705406
Alignment:
| Q |
1 |
ctttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagcatgcatgggagttgcatga |
100 |
Q |
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| T |
41705724 |
ctttggtttcaatggagtctaaagggcaatgagccattgtgcatagatcggaagagggggtggaactgtgtgctacagagcatgcatgggagttgcatga |
41705625 |
T |
|
| Q |
101 |
aatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggtgtgcatgggaac |
200 |
Q |
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| T |
41705624 |
aatgggggtgctgtgggagatgttggtagggggagagggatccgaggtaagcttgggttttaattcacagaggatgcagttgaacggtgtgcatgggaac |
41705525 |
T |
|
| Q |
201 |
caaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaaggagagagtgtaatcggagcctggtgagagtggga |
300 |
Q |
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| T |
41705524 |
caaacaaggtcacttcctgtgtccatgtagagagttatgggttgggagtggggtccgaggttgaaggagagagtgtaatcggagcctggtgagagtggga |
41705425 |
T |
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| Q |
301 |
gagagagttggttgtggtg |
319 |
Q |
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| T |
41705424 |
gagagagttggttgtggtg |
41705406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 3744338 - 3744418
Alignment:
| Q |
164 |
ttcacagaggatgcagttgaacggtgtgcatgggaaccaaacaaggtcacttcctgtgtccatgtagagagttatgggttg |
244 |
Q |
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| T |
3744338 |
ttcacagagaatgcattcgaaaggtgaacaagggaaccaaacaaggtcgctacctgtgtccatgtagagtgttatgagttg |
3744418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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