View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5333_low_1 (Length: 455)
Name: NF5333_low_1
Description: NF5333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5333_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 11654908 - 11655058
Alignment:
| Q |
289 |
gcacaaaaccgctagatgtgggaacaagaactacccaaaatgttacaatatggaacatgcctgtcctaatgcatgccgaggtggatgtgaggttgactgc |
388 |
Q |
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| T |
11654908 |
gcacaaaaccgctagatgtgggaacaagaactacccaaaatgttacaatatggaacatgcctgtcctaatgcatgccgaggtggatgtgaggttgactgc |
11655007 |
T |
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| Q |
389 |
aacacttgcaaaccaatttgtagtaagtctttatatatatttttacatctc |
439 |
Q |
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| T |
11655008 |
aacacttgcaaaccaatttgtagtaagtctttatatatatttttacatctc |
11655058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 289 - 439
Target Start/End: Original strand, 11668676 - 11668826
Alignment:
| Q |
289 |
gcacaaaaccgctagatgtgggaacaagaactacccaaaatgttacaatatggaacatgcctgtcctaatgcatgccgaggtggatgtgaggttgactgc |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11668676 |
gcacaaaaccgctagatgtgggaacaagaactacccaaaatgttacaatatggaacatgcctgtcctaatgcatgccgaggtggatgtgaggttgactgc |
11668775 |
T |
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| Q |
389 |
aacacttgcaaaccaatttgtagtaagtctttatatatatttttacatctc |
439 |
Q |
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| T |
11668776 |
aacacttgcaaaccaatttgtagtaagtctttatatatatttttacatctc |
11668826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 11654784 - 11654818
Alignment:
| Q |
159 |
catcaactaacagcccttctacatcacataaccca |
193 |
Q |
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| T |
11654784 |
catcaactaacagcccttctacatcacataaccca |
11654818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 11668552 - 11668586
Alignment:
| Q |
159 |
catcaactaacagcccttctacatcacataaccca |
193 |
Q |
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| T |
11668552 |
catcaactaacagcccttctacatcacataaccca |
11668586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 11654648 - 11654680
Alignment:
| Q |
23 |
cctcaaagcccttctacaccacacagctcacca |
55 |
Q |
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| T |
11654648 |
cctcaaagcccttctacaccacacagctcacca |
11654680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 11668416 - 11668448
Alignment:
| Q |
23 |
cctcaaagcccttctacaccacacagctcacca |
55 |
Q |
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| T |
11668416 |
cctcaaagcccttctacaccacacagctcacca |
11668448 |
T |
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