View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5334-Insertion-1 (Length: 446)

Name: NF5334-Insertion-1
Description: NF5334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5334-Insertion-1
NF5334-Insertion-1
[»] chr2 (13 HSPs)
chr2 (324-446)||(4713106-4713228)
chr2 (328-402)||(24359791-24359865)
chr2 (328-402)||(39082468-39082542)
chr2 (134-208)||(4712880-4712954)
chr2 (328-402)||(42968150-42968224)
chr2 (328-401)||(3197568-3197641)
chr2 (7-75)||(4712741-4712813)
chr2 (328-402)||(8884447-8884521)
chr2 (328-402)||(34643004-34643078)
chr2 (328-402)||(36772398-36772472)
chr2 (328-402)||(36793512-36793586)
chr2 (328-402)||(37559327-37559401)
chr2 (328-402)||(36756170-36756244)
[»] chr4 (8 HSPs)
chr4 (328-401)||(34505290-34505363)
chr4 (328-402)||(6067669-6067743)
chr4 (328-402)||(50968246-50968320)
chr4 (328-401)||(52818059-52818132)
chr4 (328-405)||(31553691-31553768)
chr4 (328-402)||(6071145-6071218)
chr4 (328-402)||(33871041-33871115)
chr4 (328-401)||(4690135-4690208)
[»] chr1 (10 HSPs)
chr1 (328-402)||(30340911-30340985)
chr1 (328-401)||(30320745-30320818)
chr1 (328-400)||(23057681-23057753)
chr1 (328-400)||(23057866-23057938)
chr1 (328-400)||(23058053-23058125)
chr1 (328-400)||(23061982-23062054)
chr1 (328-402)||(37369512-37369586)
chr1 (342-395)||(23057568-23057621)
chr1 (342-395)||(23061869-23061922)
chr1 (328-400)||(43065996-43066073)
[»] chr8 (7 HSPs)
chr8 (328-402)||(40866299-40866373)
chr8 (323-402)||(7895148-7895227)
chr8 (328-401)||(44415934-44416007)
chr8 (328-402)||(24864608-24864682)
chr8 (328-402)||(38085946-38086020)
chr8 (328-401)||(42014306-42014379)
chr8 (328-400)||(9963286-9963358)
[»] chr6 (6 HSPs)
chr6 (328-402)||(3992807-3992881)
chr6 (328-402)||(7432420-7432494)
chr6 (328-402)||(7441937-7442011)
chr6 (328-400)||(7432983-7433055)
chr6 (328-402)||(7425625-7425699)
chr6 (328-402)||(7414585-7414659)
[»] chr3 (9 HSPs)
chr3 (328-402)||(29618312-29618386)
chr3 (328-404)||(52638656-52638732)
chr3 (328-407)||(11580198-11580277)
chr3 (328-402)||(35692217-35692291)
chr3 (328-400)||(35679472-35679544)
chr3 (328-404)||(35687867-35687943)
chr3 (328-402)||(41552100-41552174)
chr3 (328-400)||(1488013-1488085)
chr3 (328-400)||(2031252-2031324)
[»] chr7 (6 HSPs)
chr7 (328-402)||(37022195-37022269)
chr7 (328-402)||(25287960-25288034)
chr7 (328-402)||(30034301-30034375)
chr7 (328-402)||(46075152-46075226)
chr7 (328-400)||(34984430-34984502)
chr7 (328-400)||(46972139-46972211)
[»] chr5 (1 HSPs)
chr5 (328-402)||(2626072-2626146)


Alignment Details
Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 324 - 446
Target Start/End: Original strand, 4713106 - 4713228
Alignment:
Q  324 aaactggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatctgcaaaacgattgtattaaa 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  || ||||||||    
T  4713106 aaactggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatctgtaaaataatcgtattaaa 4713205  T
Q  424 atgtaattattctcgaaatactt 446  Q
    || |||||||||| |||| ||||    
T  4713206 atataattattcttgaaacactt 4713228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 328 - 402
Target Start/End: Complemental strand, 24359865 - 24359791
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24359865 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 24359791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 328 - 402
Target Start/End: Complemental strand, 39082542 - 39082468
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39082542 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 39082468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 4712880 - 4712954
Alignment:
Q  134 catctggtgttaccatccaacaaaaatctccgatattttttcattttgacaaattaaggtaattaatattaagtt 208  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712880 catctggtgttgctatccaacaaaaatctccgatattttttcattttgacaaattaaggtaattaatattaagtt 4712954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 328 - 402
Target Start/End: Complemental strand, 42968224 - 42968150
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42968224 tggagatgcagggtatcgaaccctgtacctctcgcatgcaaagcaagcgctctaccatttgagctacatccccat 42968150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 328 - 401
Target Start/End: Complemental strand, 3197641 - 3197568
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 401  Q
    ||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  3197641 tggagatgcgggggatcaaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 3197568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 4712741 - 4712813
Alignment:
Q  7 agaacctacataaagatataacaacacaccaataccttcaaattttgtctt----agtacatattattcaatc 75  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  4712741 agaacctacagaaagatataacaacacaccaataccttcaaattttgtcttagtaagtacatattattcaatc 4712813  T

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Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Complemental strand, 8884521 - 8884447
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  8884521 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 8884447  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 34643004 - 34643078
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  34643004 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 34643078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 36772398 - 36772472
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  36772398 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 36772472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 36793512 - 36793586
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  36793512 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 36793586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 37559327 - 37559401
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  37559327 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 37559401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 36756170 - 36756244
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||||    
T  36756170 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcactctaccatctgagctacatccccat 36756244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 328 - 401
Target Start/End: Complemental strand, 34505363 - 34505290
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34505363 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 34505290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 328 - 402
Target Start/End: Complemental strand, 6067743 - 6067669
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6067743 tggagatgcagggtatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 6067669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 50968246 - 50968320
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50968246 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 50968320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 328 - 401
Target Start/End: Complemental strand, 52818132 - 52818059
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 401  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  52818132 tggagatgcagggtatcgaaccctgtacctcccgcatgcaaagcgggcgctctaccatttgagctacatcccca 52818059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 328 - 405
Target Start/End: Complemental strand, 31553768 - 31553691
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatctg 405  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  31553768 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatctg 31553691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Complemental strand, 6071218 - 6071145
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  6071218 tggagatgc-ggggatcaaaccctgaacctcttgcatgcaaagcaagcgctctaccatttgagctacatccccat 6071145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 33871041 - 33871115
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  33871041 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 33871115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 4690135 - 4690208
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 401  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  4690135 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatcccca 4690208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 30340911 - 30340985
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340911 tggagatgcaggggatcaaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 30340985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 328 - 401
Target Start/End: Original strand, 30320745 - 30320818
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 401  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  30320745 tggagatgcagggtatcgaaccctgtacctcccgcatgcaaagcgggcgctctaccatttgagctacatcccca 30320818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 23057681 - 23057753
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 400  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23057681 tggagatgcagggtattgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 23057753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 23057866 - 23057938
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 400  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  23057866 tggagatgcagggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacaccccc 23057938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 23058053 - 23058125
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 400  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23058053 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 23058125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 23061982 - 23062054
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 400  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23061982 tggagatgcagggtattgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccc 23062054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 37369512 - 37369586
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  37369512 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 37369586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 23057568 - 23057621
Alignment:
Q  342 atcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctaca 395  Q
    |||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  23057568 atcgaaccccatacctctcgcatgcaaagcgagcgctctaccatgtgagctaca 23057621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 23061869 - 23061922
Alignment:
Q  342 atcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctaca 395  Q
    |||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  23061869 atcgaaccccatacctctcgcatgcaaagcgagcgctctaccatgtgagctaca 23061922  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 400
Target Start/End: Complemental strand, 43066073 - 43065996
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaa-----gcgagcgctctaccatttgagctacatcccc 400  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| ||     |||||||||||||||| ||||||||||||||    
T  43066073 tggagatgcggggtatcgagccccgtacctctcgcatgctaagtgatgcgagcgctctaccatatgagctacatcccc 43065996  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 40866299 - 40866373
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40866299 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 40866373  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 323 - 402
Target Start/End: Original strand, 7895148 - 7895227
Alignment:
Q  323 gaaactggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    |||| ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7895148 gaaaatggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 7895227  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 328 - 401
Target Start/End: Complemental strand, 44416007 - 44415934
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 401  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44416007 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatcccca 44415934  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Complemental strand, 24864682 - 24864608
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  24864682 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 24864608  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Complemental strand, 38086020 - 38085946
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  38086020 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 38085946  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 401
Target Start/End: Complemental strand, 42014379 - 42014306
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccca 401  Q
    ||||| ||| ||| ||||||||| || |||||||||||| |||||||||||||||||| ||||||||| |||||    
T  42014379 tggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccca 42014306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 9963286 - 9963358
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 400  Q
    ||||| ||| ||| ||||||||| || |||||||||||| |||||||||||||||||| ||||||||| ||||    
T  9963286 tggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 9963358  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 3992807 - 3992881
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3992807 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 3992881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 7432420 - 7432494
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7432420 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 7432494  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 7441937 - 7442011
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||| ||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7441937 tggagttgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 7442011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 7432983 - 7433055
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 400  Q
    ||||||||| ||| ||||| ||| |||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  7432983 tggagatgcggggtatcgatccccgtacctcttgcatgctaagcgagcgctctaccatctgagctacatcccc 7433055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 7425625 - 7425699
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||| | ||| ||||||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  7425625 tggagatgcggggtatcaatccccgtacctctcacatgctaagcgagcgctctaccatctgagctacatccccat 7425699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 7414585 - 7414659
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||| |||| || ||||| |||  |||||||| ||||| |||||||||||||||||| | ||||||||||||||    
T  7414585 tggagttgcaaggtatcgatccccatacctctcacatgctaagcgagcgctctaccatctaagctacatccccat 7414659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 328 - 402
Target Start/End: Complemental strand, 29618386 - 29618312
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29618386 tggagatgcgggggatcgaaccccgtgcctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 29618312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 328 - 404
Target Start/End: Original strand, 52638656 - 52638732
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatct 404  Q
    |||||||||| || ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  52638656 tggagatgcatggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatttgagctacatccccatct 52638732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 407
Target Start/End: Complemental strand, 11580277 - 11580198
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatctgca 407  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||    
T  11580277 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatttgca 11580198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Complemental strand, 35692291 - 35692217
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||||||| ||| | |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  35692291 tggagatgcagggtatcaatccctatacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 35692217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 328 - 400
Target Start/End: Complemental strand, 35679544 - 35679472
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 400  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  35679544 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatcccc 35679472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 328 - 404
Target Start/End: Complemental strand, 35687943 - 35687867
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccatct 404  Q
    ||||||||| ||| ||||| |||  |||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  35687943 tggagatgcggggtatcgatccccatacctctcgcatgctaagcgagcgctctaccatctgagctacatccccatct 35687867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 402
Target Start/End: Complemental strand, 41552174 - 41552100
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||| ||| ||| ||||||||| || |||||||||||| |||||||||||||||||| ||||||||| ||||||    
T  41552174 tggagctgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaaccccat 41552100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 400
Target Start/End: Complemental strand, 1488085 - 1488013
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 400  Q
    ||||| ||| ||| ||||||||| || |||||||||||| |||||||||||||||||| ||||||||| ||||    
T  1488085 tggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 1488013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 400
Target Start/End: Complemental strand, 2031324 - 2031252
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 400  Q
    ||||| ||| ||| ||||||||| || |||||||||||| |||||||||||||||||| ||||||||| ||||    
T  2031324 tggaggtgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacaccccc 2031252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 37022195 - 37022269
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37022195 tggagatgcggggtatcgaaccccgtacctctcgcatgcaaagcgagcgctctaccatgtgagctacatccccat 37022269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Complemental strand, 25288034 - 25287960
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  25288034 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 25287960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Complemental strand, 30034375 - 30034301
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  30034375 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 30034301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 46075152 - 46075226
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  46075152 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 46075226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 34984430 - 34984502
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 400  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  34984430 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatcccc 34984502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 46972139 - 46972211
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatcccc 400  Q
    |||||| || ||| ||||||||| || |||||||||||| |||||||||||||||||| |||||||| |||||    
T  46972139 tggagacgcggggaatcgaaccccgtgcctctcgcatgcgaagcgagcgctctaccatatgagctacgtcccc 46972211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 328 - 402
Target Start/End: Original strand, 2626072 - 2626146
Alignment:
Q  328 tggagatgcaggggatcgaaccctgtacctctcgcatgcaaagcgagcgctctaccatttgagctacatccccat 402  Q
    ||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  2626072 tggagatgcggggtatcgatccccgtacctctcgcatgctaagcgagcgctctaccatctgagctacatccccat 2626146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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