View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5334_high_1 (Length: 518)
Name: NF5334_high_1
Description: NF5334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5334_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 502
Target Start/End: Original strand, 125217 - 125701
Alignment:
| Q |
18 |
tatgatagagaattgttccactcgagaatcgaattcgattcttatgaacaatttgtccattgataaaacttattaatcacttgaactcaattacttgatt |
117 |
Q |
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| T |
125217 |
tatgatagagaattattccattcaagaatcgaactcgattcttatgaacaatttgtccattgataaaacttattaatcacttgagttcaattacttgatt |
125316 |
T |
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| Q |
118 |
aaattattttaatatattatcaactatcttattttctttatgcacatcatatgattatgcgatgtgtggttggatatcaagggaggaacaagccttaaat |
217 |
Q |
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| T |
125317 |
taattattttaatatattatcaactatcttattttctttatgcacatcatatgattatgcgatgtgtggttggatatcaagggaggaacaagccttaaat |
125416 |
T |
|
| Q |
218 |
tttaccaatgttttattaccttcctttaaatttatcacagttcatcaacaattgattaatttaagcagtnnnnnnncttaacccttaaagcaagtggtaa |
317 |
Q |
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| T |
125417 |
tttaccaatgttttattaccttcctttaaatttatcacagttcatcaacaattgattaatttaagcagtaaaaaaacttaacccttaaagcaagtggtaa |
125516 |
T |
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| Q |
318 |
aaataagactgattcaagaattaaattgaatgatgttgtgttacaatttaaaaagtaagtcacggaaggactatgacaattattaagcataattnnnnnn |
417 |
Q |
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| T |
125517 |
aaataagactgattcaagaattaaattgaatgatgttgtgttacaatttaaaaagtaagtcacggaaggactatgacaattattaagcataattaaaaaa |
125616 |
T |
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| Q |
418 |
nttaacgataagaactttgtccttagactcctctcaaataagaaatgtgtccttaagctagttctcaattctagactatgatttt |
502 |
Q |
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| T |
125617 |
attaacgataagaactttgtccttagactcctctcaaataagaaatgtgtccttaagctagttcttaactctagactacgatttt |
125701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 400
Target Start/End: Original strand, 128278 - 128375
Alignment:
| Q |
305 |
aagcaagtggtaaaaataagactgattcaagaattaaattgaatgatg--ttgtgttacaatttaaaaagtaagtcacgg-aaggactatgacaattat |
400 |
Q |
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| T |
128278 |
aagcaactggtaaaaaaaccattgattcaagaattaaatttaatgatgctttgtgttacaattt-aaaagtaagtcaaggaaagaattatgacaattat |
128375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 42002478 - 42002529
Alignment:
| Q |
62 |
tgaacaatttgtccattgataaaacttattaatcacttgaactcaattactt |
113 |
Q |
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| T |
42002478 |
tgaacaatttgtcctttaataaaacttattaatcacttgagatcaattactt |
42002529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 112
Target Start/End: Complemental strand, 50102009 - 50101978
Alignment:
| Q |
81 |
taaaacttattaatcacttgaactcaattact |
112 |
Q |
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| T |
50102009 |
taaaacttattaatcacttgaactcaattact |
50101978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 26172770 - 26172726
Alignment:
| Q |
75 |
cattgataaaacttattaatcacttgaactcaattacttgattaa |
119 |
Q |
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| T |
26172770 |
cattgatgaaactcattaaccacttgaactcaattacttggttaa |
26172726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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