View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5334_high_4 (Length: 311)
Name: NF5334_high_4
Description: NF5334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5334_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 21 - 300
Target Start/End: Original strand, 29819521 - 29819800
Alignment:
| Q |
21 |
tgtcaatcaaaacttgaattataattttggggaaataaccacaattttctaatatatctattactttatctatcttcattcccttgaagaaacatgcaat |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29819521 |
tgtcaatcaaaacttgaattataattttggggaaataaccacaattttctaatatatctattactttatctatcttcattcccttgaagaaacacgcaat |
29819620 |
T |
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| Q |
121 |
atcaagaaatacatccttctccattggatctaagctctcataacttatttccagtttatcttggattttacgtagaggcacacttcttannnnnnnaatg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29819621 |
atcaagaaatacatccttctccattggatctaagctctcataacttatttccagtttatcttggattttacgtagaggcacacttcttatttttttaatg |
29819720 |
T |
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| Q |
221 |
gcactatgccaaagatcaacatttcttccataaagataggaaccaaacacctcaagtgccaatggaagaccaccagtata |
300 |
Q |
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| T |
29819721 |
gcactatgccaaagatcaacatttcttccataaagataggaaccaaacacctcaagtgccaatggaagaccaccagtata |
29819800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 296
Target Start/End: Original strand, 29827764 - 29828039
Alignment:
| Q |
21 |
tgtcaatcaaaacttgaattataattttggggaaataaccacaattttctaatatatctattactttatctatcttcattcccttgaagaaacatgcaat |
120 |
Q |
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|||| ||||||||||||||| |||||| |||| ||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| | ||| |
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| T |
29827764 |
tgtctatcaaaacttgaattgtaatttcggggtgatatccacaattttctaatatatttattactttatctctcttcattcccttgaagaaacaggaaat |
29827863 |
T |
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| Q |
121 |
atcaagaaatacatccttctccattggatctaagctctcataacttatttccagtttatcttggattttacgtagaggcacacttcttannnnnnnaatg |
220 |
Q |
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| T |
29827864 |
atctagaaatatattcttctccatggcatctaagctctcataacttattttcagtttatcttggatttcacgtagaggagcacttcttatatttttaata |
29827963 |
T |
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| Q |
221 |
gcactatgccaaagatcaacatttcttccataaagataggaaccaaacacctcaagtgccaatggaagaccaccag |
296 |
Q |
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| T |
29827964 |
gcactatgccaaagatcaacacttcttccataaagataggaacctaacacctcaagtgccaatggaagaccaccag |
29828039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 23 - 295
Target Start/End: Complemental strand, 29572509 - 29572237
Alignment:
| Q |
23 |
tcaatcaaaacttgaattataattttggggaaataaccacaattttctaatatatctattactttatctatcttcattcccttgaagaaacatgcaatat |
122 |
Q |
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|||||||||| ||||||| ||||| |||||||| |||||| |||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||| |
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| T |
29572509 |
tcaatcaaaatttgaattccaatttgagggaaatagccacaactttctaatatatctataactttatctcccttcattcccttaaagaaacaagcaatat |
29572410 |
T |
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| Q |
123 |
caagaaatacatccttctccattggatctaagctctcataacttatttccagtttatcttggattttacgtagaggcacacttcttannnnnnnaatggc |
222 |
Q |
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| T |
29572409 |
ctagaaaaatatccttctccatggtatctaaactatcataacttattttcaggttatcttggactctagggtggggaaaacttcttaattttttaacagc |
29572310 |
T |
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| Q |
223 |
actatgccaaagatcaacatttcttccataaagataggaaccaaacacctcaagtgccaatggaagaccacca |
295 |
Q |
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| T |
29572309 |
actatgccaaacatcaatatttcttccatacagataggaacctaacacctcaagtgccaatggaagaccacca |
29572237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 291
Target Start/End: Original strand, 11123773 - 11124009
Alignment:
| Q |
55 |
ataaccacaattttctaatatatctattactttatctatcttcattcccttgaagaaacatgcaatatcaagaaatacatccttctccattggatctaag |
154 |
Q |
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|||||||||| |||||| || |||||||||| |||||| | |||||| |||||||||||||||||||| ||||| | || |||||||| | | ||| |
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| T |
11123773 |
ataaccacaaccttctaaaatttctattacttcatctatgtccattcctttgaagaaacatgcaatatctagaaacaaatttttctccatagattgtaaa |
11123872 |
T |
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| Q |
155 |
ctctcataacttatttccagtttatcttggattttacgtagaggcacacttcttannnnnnnaatggcactatgccaaagatcaacatttcttccataaa |
254 |
Q |
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|| ||||| ||||||| || | |||| |||||||| |||| ||||||||| | ||||||||||||| |||||| ||||||||| || |
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| T |
11123873 |
ctatcatagcttattttcaatgtatcatggattttgtagtgaggaccacttcttatttgttctaaagcactatgccaaacctcaacagttcttccatgaa |
11123972 |
T |
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| Q |
255 |
gataggaaccaaacacctcaagtgccaatggaagacc |
291 |
Q |
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| T |
11123973 |
gatgtgaacctaatacctcaagtgctaatggaagacc |
11124009 |
T |
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