View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5334_low_2 (Length: 502)
Name: NF5334_low_2
Description: NF5334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5334_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 33 - 486
Target Start/End: Complemental strand, 39621207 - 39620754
Alignment:
| Q |
33 |
ataatactaaagaaagcaatttgatggaaaataagtataagtctctctttcnnnnnnngtcatttaaaatttgctgatgtgaaatgacacctgtggtgtt |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39621207 |
ataatactaaagaaagcaatttgatggaaaataagtataagtctctctttctttttttgtcatttaaaatttgctgatgtgaaatgacacctgtggtgtt |
39621108 |
T |
|
| Q |
133 |
tgttttaggagaaacaaagctcttattgtagaattgagcattccagctcctgattctgtgaatcttcgttttccttcaaaatactcaagaccccttttcg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39621107 |
tgttttaggagaaacaaagctcttattgtagaattgagcattccagctcctgattctgtgaatcttcgttttccttcaaaatactcaagaccccttttcg |
39621008 |
T |
|
| Q |
233 |
ctcaattcaaggcttgcttatggaaacaacattggtcttactggcggaatccgcgatacaatgcattaagatttctcttcacagccgttgcctctatctt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39621007 |
ctcaattcaaggcttgcttatggaaacaacattggtcttactggcggaatccgcgatacaatgcattaagatttctcttcacagccgttgcctctatctt |
39620908 |
T |
|
| Q |
333 |
tttcgggagcgtgttttatggccttggctccaaaatgtaagccgaaaactagaaactgttatgcctttaaaatatgagtttgcttctannnnnnnctttc |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39620907 |
tttcgggagcgtgttttatggccttggctccaaaatgtaagccgaaaactagaaactgttatgcctttaaaatatgagtttgcttctatttttttctttc |
39620808 |
T |
|
| Q |
433 |
taagattaggttcacttcaatcaactacagtgacaagagacaagatctccttaa |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39620807 |
taagattaggttcacttcaatcaactacagtgaaaagagacaagatctccttaa |
39620754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 315
Target Start/End: Complemental strand, 39588278 - 39588098
Alignment:
| Q |
135 |
ttttaggagaaacaaagctcttattgtagaattgagcattccagctcctgattc-tgtgaatcttcgttttccttcaaaatactcaagaccccttttcgc |
233 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||| ||| |||| ||| ||||||||||||| ||||| || || ||||| |
|
|
| T |
39588278 |
ttttaggagaaacaaagctcttattcaagaattgagcactccagctcctttttcaaatgaa-ctttgttttccttcaaagtactctaggtcc---ttcgc |
39588183 |
T |
|
| Q |
234 |
t---caattcaaggcttgcttatggaaacaacattggtcttactggcggaatccgcgatacaatgcattaagatttctcttcaca |
315 |
Q |
| |
|
| ||||| | | |||| ||||||||||||||||||||||||||||| || || | |||||||| |||| |||||||||||| |
|
|
| T |
39588182 |
tgtccaatttatgacttgtttatggaaacaacattggtcttactggcgcaaccctctgtacaatgccataaggtttctcttcaca |
39588098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 315
Target Start/End: Complemental strand, 39573663 - 39573591
Alignment:
| Q |
243 |
ggcttgcttatggaaacaacattggtcttactggcggaatccgcgatacaatgcattaagatttctcttcaca |
315 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||| |||||| || |||| ||| |||||||| |
|
|
| T |
39573663 |
ggcttgtttatggaaacaacattggtcttactggcgcaatccgttgtacaattcaataaggtttatcttcaca |
39573591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 1083638 - 1083597
Alignment:
| Q |
243 |
ggcttgcttatggaaacaacattggtcttactggcggaatcc |
284 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1083638 |
ggcttgtttatggaaacaacattggtcttactggcgcaatcc |
1083597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 39339875 - 39339916
Alignment:
| Q |
243 |
ggcttgcttatggaaacaacattggtcttactggcggaatcc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
39339875 |
ggcttgcttatggaaacaacattggtcttattggcgcaatcc |
39339916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 39354696 - 39354737
Alignment:
| Q |
243 |
ggcttgcttatggaaacaacattggtcttactggcggaatcc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
39354696 |
ggcttgcttatggaaacaacattggtcttattggcgcaatcc |
39354737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 39546331 - 39546290
Alignment:
| Q |
243 |
ggcttgcttatggaaacaacattggtcttactggcggaatcc |
284 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39546331 |
ggcttgtttatggaaacaacattggtcttactggcgcaatcc |
39546290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 39563124 - 39563083
Alignment:
| Q |
243 |
ggcttgcttatggaaacaacattggtcttactggcggaatcc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
39563124 |
ggcttgcttatggaaacaacattggtcttattggcgcaatcc |
39563083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 284
Target Start/End: Original strand, 39367301 - 39367338
Alignment:
| Q |
247 |
tgcttatggaaacaacattggtcttactggcggaatcc |
284 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
39367301 |
tgcttatggaaacaacattggtcttattggcgcaatcc |
39367338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 172
Target Start/End: Complemental strand, 39573775 - 39573734
Alignment:
| Q |
131 |
tttgttttaggagaaacaaagctcttattgtagaattgagca |
172 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
39573775 |
tttgttataggagaaacaaagctcttattgaagatttgagca |
39573734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 2896179 - 2896130
Alignment:
| Q |
243 |
ggcttgcttatggaaacaacattggtcttactggcggaatccgcgataca |
292 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
2896179 |
ggcttgcctatggaaacaacattggtcatactggcgcaatccgccataca |
2896130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 2888188 - 2888237
Alignment:
| Q |
243 |
ggcttgcttatggaaacaacattggtcttactggcggaatccgcgataca |
292 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| || |||| ||||| |
|
|
| T |
2888188 |
ggcttgcttatggaaacaacattggtcatattggcgcaacccgccataca |
2888237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University