View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5334_low_6 (Length: 277)
Name: NF5334_low_6
Description: NF5334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5334_low_6 |
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| [»] chr7 (3 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 29820035 - 29820311
Alignment:
| Q |
1 |
cacatcatcaagaacaagtagaaccttttttctacggaaagagttttgtattgnnnnnnngccatcatacaaattatgaaaatcattcctacttatactc |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29820035 |
cacatcatcaagaacaagtagaacctttttcctacggaaagagttttgtattgtttttttgccatcatacaaattatgaaaatcattcctacttatactc |
29820134 |
T |
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| Q |
101 |
atatgagaaagaagttgtctttgtaagtgaactaaaccatttgtctcagatatctctctaacattttctagaaagcaagtaagttgaaattcacatcgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29820135 |
atatgagaaagaagttgtctttgtaagtgaactaaaccatttgtctcagatatctctctaacattttctagaaagcaagtaagttgaaattcacatcgga |
29820234 |
T |
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| Q |
201 |
ttgcttcatagaccgctctagcaatagttgacttgcctatgccgcccataccccatatgcctataaagcgaacgtca |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
29820235 |
ttgcttcatagaccgctctagcaatagttgacttgcctatgccacccataccccatatgccgataaagcgaacgtca |
29820311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 29571997 - 29571721
Alignment:
| Q |
1 |
cacatcatcaagaacaagtagaaccttttttctacggaaagagttttgtattgnnnnnnngccatcatacaaattatgaaaatcattcctacttatactc |
100 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
29571997 |
cacatcatcaagaacaagtagaaccttttttctgcataaagagttttgtattgtttttttcccatcatacaaatcatgaaaatcattcctacttatactc |
29571898 |
T |
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| Q |
101 |
atatgagaaagaagttgtctttgtaagtgaactaaaccatttgtctcagatatctctctaacattttctagaaagcaagtaagttgaaattcacatcgga |
200 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29571897 |
agatgagaaagaagttgtctttgtaagtgaactaaaccatttgtctcagatatctctctaacattttctagaaagcaagtaagttcaaattcacatcgga |
29571798 |
T |
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| Q |
201 |
ttgcttcatagaccgctctagcaatagttgacttgcctatgccgcccataccccatatgcctataaagcgaacgtca |
277 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29571797 |
ttgtttcatagaccgctctagcaatagttgacttgcctatgccacccataccccatatgcctataaagcgaacgtca |
29571721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 29828278 - 29828550
Alignment:
| Q |
1 |
cacatcatcaagaacaagtagaaccttttttctacggaaagagttttgtattgnnnnnnngccatcatacaaattatgaaaatcattcctacttatactc |
100 |
Q |
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||||||||||||||||||||||||||||||||| | ||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
29828278 |
cacatcatcaagaacaagtagaaccttttttctgcataaagaattttgtattgtttttttgccatcatacaaattatgaaaatcatttctacttatactt |
29828377 |
T |
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| Q |
101 |
atatgagaaagaagttgtctttgtaagtgaactaaaccatttgtctcagatatctctctaacattttctagaaagcaagtaagttgaaattcacatcgga |
200 |
Q |
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| T |
29828378 |
agatgagaaagaagttgcctttgtatgtgaactaaaccatttgcctcagatatctctctaacattttcaagaaagcaagtagtttgaaattcacattgga |
29828477 |
T |
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| Q |
201 |
ttgcttcatagaccgctctagcaatagttgacttgcctatgccgcccataccccatatgcctataaagcgaac |
273 |
Q |
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||||||| || || |||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
29828478 |
ttgcttcgtaaacagctctagcaatagttgtcttacctatgccacccataccccatatgcctataaagcgaac |
29828550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 117
Target Start/End: Complemental strand, 20990 - 20885
Alignment:
| Q |
13 |
aacaagtagaaccttttttctacggaaagagttttgtattgnnnnnnn-gccatcatacaaattatgaaaatcattcctacttatactcatatgagaaag |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20990 |
aacaagtagaaccttttttctacggaaagagttttgtattgttttttttgccatcatacaaattatgaaaatcattcctacttatactcatatgagaaag |
20891 |
T |
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| Q |
112 |
aagttg |
117 |
Q |
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|||||| |
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| T |
20890 |
aagttg |
20885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 275
Target Start/End: Original strand, 11124458 - 11124530
Alignment:
| Q |
203 |
gcttcatagaccgctctagcaatagttgacttgcctatgccgcccataccccatatgcctataaagcgaacgt |
275 |
Q |
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||||||||||| |||||||||||||| ||| || ||||| ||||| |||||||||||||| |||||||||| |
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| T |
11124458 |
gcttcatagactaatctagcaatagttgtctttccaatgccacccatgccccatatgcctatgaagcgaacgt |
11124530 |
T |
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