View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335-Insertion-1 (Length: 275)
Name: NF5335-Insertion-1
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335-Insertion-1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 125697 - 125965
Alignment:
| Q |
8 |
attttatttgaaacttttgtttatttccttcgtatcaatttcaagatataatgctcaactcatgttgtgttacttacatgacccaaaattactaacaaga |
107 |
Q |
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| T |
125697 |
attttatttgaaacttttgtttatttccttcgtattaatttcaagatataatgcgcaactcatgttgtgttacttacatgatccaaaattactaacaaga |
125796 |
T |
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| Q |
108 |
gataaaatgctacagatgttactttcttcaccttcaatttcgaatattcatgtttatcatgcttctttcactgcactcatttcgacaagcttttcttct- |
206 |
Q |
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| T |
125797 |
gataaaatgctacatatgttactttcttcaccttcaatttcgaatattcatgtttatcatgcttctttcactgcactcatttcgacaaccttttcttcta |
125896 |
T |
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| Q |
207 |
attcatttcaacatacatttcgtcaatcaatggtttctaataacaaatacaactcttaagtattatcga |
275 |
Q |
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| T |
125897 |
attcatttcaacgtacatttcgtcaatcaatggtttctaataacaaatacaactcttaagtattatcga |
125965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 4412707 - 4412648
Alignment:
| Q |
184 |
tcatttcgacaagcttttcttctattcatttcaacatacatttcgtcaatcaatggtttc |
243 |
Q |
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| T |
4412707 |
tcatttcgacaagcttttcttctattcatttcagcatacatttcctcaatcaatggtttc |
4412648 |
T |
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