View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5335-Insertion-2 (Length: 846)
Name: NF5335-Insertion-2
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335-Insertion-2 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] scaffold0013 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 251 - 846
Target Start/End: Complemental strand, 21264764 - 21264169
Alignment:
| Q |
251 |
tgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttac |
350 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21264764 |
tgtcaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttac |
21264665 |
T |
|
| Q |
351 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacactccccctcaa |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21264664 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacactccccctcaa |
21264565 |
T |
|
| Q |
451 |
gttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgagtatatctgctaactggtcctcag |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21264564 |
gttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttttgctgcatacggcttttgtgagtatatctgctaactggtcctcag |
21264465 |
T |
|
| Q |
551 |
atttaacaaatggaaattggattattttggtctccagattttgtttaataaagtgccaatctacttccacatgtttggttcgatcatgttgaactggatt |
650 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21264464 |
atttaacaaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccacatgtttggttcgatcatgttgaaccggatt |
21264365 |
T |
|
| Q |
651 |
gtgagaaatgtctatagcagccttgttgtcacaaaatagtttcatttcacaacttggagcaaatccaatttctgtcaacaaccttcgcagccaaaggagc |
750 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21264364 |
gtgagaaatgtttatagcagccttgttgtcacaaaatagtttcatttcacaatttggagcaaatccaatttctgtcaacaaccttcgcagccaaaggagc |
21264265 |
T |
|
| Q |
751 |
tcacaaagacccttagccatcccccgaaattcagcttcagcactggataatgctacaaccttctgttttttacttttccatgaaaccaaatttcct |
846 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21264264 |
tcacaaagacccttagccatcccccgaaattcagcttcagcactggataatgctacaaccttctgttttttacttttccatgaaaccaaatttcct |
21264169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 251 - 439
Target Start/End: Complemental strand, 21260183 - 21259995
Alignment:
| Q |
251 |
tgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttac |
350 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21260183 |
tgtcaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttac |
21260084 |
T |
|
| Q |
351 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaaca |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21260083 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaaca |
21259995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 556; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 259 - 846
Target Start/End: Complemental strand, 47805328 - 47804741
Alignment:
| Q |
259 |
tgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttactagactga |
358 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47805328 |
tgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttactagactga |
47805229 |
T |
|
| Q |
359 |
aataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacactccccctcaagttggtgc |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47805228 |
aataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacactccccctcaagttggtgc |
47805129 |
T |
|
| Q |
459 |
acagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgagtatatctgctaactggtcctcagatttaaca |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47805128 |
acagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttttgctgcatacggcttttgtgagtatatctgctaactggtcctcagatttaaca |
47805029 |
T |
|
| Q |
559 |
aatggaaattggattattttggtctccagattttgtttaataaagtgccaatctacttccacatgtttggttcgatcatgttgaactggattgtgagaaa |
658 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47805028 |
aatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccacatgtttggttcgatcatgttgaaccggattgtgagaaa |
47804929 |
T |
|
| Q |
659 |
tgtctatagcagccttgttgtcacaaaatagtttcatttcacaacttggagcaaatccaatttctgtcaacaaccttcgcagccaaaggagctcacaaag |
758 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47804928 |
tgtttatagcagccttgttgtcacaaaatagtttcatttcacaatttggagcaaatccaatttctgtcaacaaccttcgcagccaaaggagctcacaaag |
47804829 |
T |
|
| Q |
759 |
acccttagccatcccccgaaattcagcttcagcactggataatgctacaaccttctgttttttacttttccatgaaaccaaatttcct |
846 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47804828 |
acccttagccatcccccgaaattcagcttcagcactggataatgctacaaccttctgttttttacttttccatgaaaccaaatttcct |
47804741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 259 - 439
Target Start/End: Complemental strand, 47800746 - 47800566
Alignment:
| Q |
259 |
tgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttactagactga |
358 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
47800746 |
tgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttactagattga |
47800647 |
T |
|
| Q |
359 |
aataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaaca |
439 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47800646 |
aataatggtaaattatttttgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaaca |
47800566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 426 - 695
Target Start/End: Original strand, 34167698 - 34167967
Alignment:
| Q |
426 |
aactcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtg |
525 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||| ||| ||| ||||||||||| ||||||||| |||| | | || | || |||||||| |
|
|
| T |
34167698 |
aactcatgccaacactccccctcaagttggtgagtagatatttctaatacccaacttgtctagtgagttgtgaaagactttactagagacagcttttgtt |
34167797 |
T |
|
| Q |
526 |
agtatatctgctaactggtcctcagatttaacaaatggaaattggattattttggtctccagattttgtttaataaagtgccaatctacttccacatgtt |
625 |
Q |
| |
|
| |||||||||| || || |||||| | ||||||||||||| ||| || || ||| ||||||||||| ||||| || | ||| || || | ||| | |
|
|
| T |
34167798 |
aacatatctgctagttgatcttcagatctcacaaatggaaatttgatgatcttttcctcaagattttgtttgataaaatgtctatccacctcaatatgct |
34167897 |
T |
|
| Q |
626 |
tggttcgatcatgttgaactggattgtgagaaatgtctatagcagccttgttgtcacaaaatagtttcat |
695 |
Q |
| |
|
| || |||||||||||||| ||||| || || || || || || |||||||| ||||| || |||||||| |
|
|
| T |
34167898 |
tagtacgatcatgttgaacaggattatgcgagatttcgattgctgccttgttatcacagaacagtttcat |
34167967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 621 - 683
Target Start/End: Original strand, 2701166 - 2701228
Alignment:
| Q |
621 |
atgtttggttcgatcatgttgaactggattgtgagaaatgtctatagcagccttgttgtcaca |
683 |
Q |
| |
|
|||||| || |||||||||||||||||||| |||| ||| |||||| |||||||||||||| |
|
|
| T |
2701166 |
atgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcaca |
2701228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 259 - 846
Target Start/End: Complemental strand, 6847899 - 6847312
Alignment:
| Q |
259 |
tgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttactagactga |
358 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6847899 |
tgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttactagactga |
6847800 |
T |
|
| Q |
359 |
aataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacactccccctcaagttggtgc |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6847799 |
aataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacgctccccctcaagttggtgc |
6847700 |
T |
|
| Q |
459 |
acagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgagtatatctgctaactggtcctcagatttaaca |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6847699 |
acagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttttgctgcatacggcttttgtgagtatatctgctaactggtgctcagatttaaca |
6847600 |
T |
|
| Q |
559 |
aatggaaattggattattttggtctccagattttgtttaataaagtgccaatctacttccacatgtttggttcgatcatgttgaactggattgtgagaaa |
658 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6847599 |
aatggaaattgaattattttggtctccagattttgtttaataaaccgccgatctacttccacatgtttggttcgatcatgttgaaccggattgtgagaaa |
6847500 |
T |
|
| Q |
659 |
tgtctatagcagccttgttgtcacaaaatagtttcatttcacaacttggagcaaatccaatttctgtcaacaaccttcgcagccaaaggagctcacaaag |
758 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6847499 |
tgtttatagcagccttgttgtcacaaaatagtttcatttcacaatttggagcaaatccaatttctgtcaacaaccttcgcagccaaaggagctcacaaag |
6847400 |
T |
|
| Q |
759 |
acccttagccatcccccgaaattcagcttcagcactggataatgctacaaccttctgttttttacttttccatgaaaccaaatttcct |
846 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6847399 |
acccttagccatcccccgaaattcagcttcagcactggataatgctacaaccttctgttttttacttttccatgaaaccaaatttcct |
6847312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 259 - 440
Target Start/End: Complemental strand, 6843296 - 6843115
Alignment:
| Q |
259 |
tgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttactagactga |
358 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
6843296 |
tgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaatctatttttactagactga |
6843197 |
T |
|
| Q |
359 |
aataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacac |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6843196 |
aataatggtaaattatttctgattacaaatcaaatccctatgattcctcatgatatatcagaggcataactcacgccaacac |
6843115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 426 - 832
Target Start/End: Original strand, 5860714 - 5861120
Alignment:
| Q |
426 |
aactcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtg |
525 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||| ||| ||| ||||||||||| ||||||||| |||| | | || | || |||||||| |
|
|
| T |
5860714 |
aactcatgccaacactccccctcaagttggtgagtagatatttctaatacccaacttgtctagtgagttgtgaaagactttactagagacagcttttgtt |
5860813 |
T |
|
| Q |
526 |
agtatatctgctaactggtcctcagatttaacaaatggaaattggattattttggtctccagattttgtttaataaagtgccaatctacttccacatgtt |
625 |
Q |
| |
|
| |||||||||| || || |||||| | ||||||||||||| ||| || || ||| ||||||||||| ||||| || | ||| || || | ||| | |
|
|
| T |
5860814 |
aacatatctgctagttgatcttcagatctcacaaatggaaatttgatgatcttttcctcaagattttgtttgataaaatgtctatccacctcaatatgct |
5860913 |
T |
|
| Q |
626 |
tggttcgatcatgttgaactggattgtgagaaatgtctatagcagccttgttgtcacaaaatagtttcatttcacaacttggagcaaatccaatttctgt |
725 |
Q |
| |
|
| || |||||||||||||| ||||| || || || || | || |||||||| ||||| || |||||||| || |||| ||| |||||||| || |
|
|
| T |
5860914 |
tagtacgatcatgttgaacaggattatgcgagatttcaactgctgccttgttatcacagaacagtttcatctccatttttggttcaacaccaatttcagt |
5861013 |
T |
|
| Q |
726 |
caacaaccttcgcagccaaaggagctcacaaagacccttagccatcccccgaaattcagcttcagcactggataatgctacaaccttctgttttttactt |
825 |
Q |
| |
|
|||||||||| | ||| || | |||||||| ||||||| ||| || || || || ||||| ||||| |||| || |||||||| || ||||||||| |
|
|
| T |
5861014 |
caacaacctttttaaccatagcaattcacaaaggcccttagacattcctcggaactctgcttctgcactagatagagccacaaccttttgctttttactt |
5861113 |
T |
|
| Q |
826 |
ttccatg |
832 |
Q |
| |
|
|||||| |
|
|
| T |
5861114 |
ctccatg |
5861120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 428 - 842
Target Start/End: Original strand, 38460058 - 38460472
Alignment:
| Q |
428 |
ctcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgag |
527 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| |||| |||||| ||||| ||||||||||| |
|
|
| T |
38460058 |
ctcacaccaacactccccctcaagttggtgcatagagatctcgaatacccaacttgtcaagtgagttgaagaagtctctgctacatacagcttttgtgag |
38460157 |
T |
|
| Q |
528 |
tatatctgctaactggtcctcagatttaacaaatggaaattggattattttggtctccagattttgtttaataaagtgccaatctacttccacatgtttg |
627 |
Q |
| |
|
|||||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38460158 |
tatatctgctaattgatcttcagatttaacaaatggaaattgaattattttggtctccagattttgtttaataaagtgccgatctacttccacatgtttg |
38460257 |
T |
|
| Q |
628 |
gttcgatcatgttgaactggattgtgagaaatgtctatagcagccttgttgtcacaaaatagtttcatttcacaacttggagcaaatccaatttctgtca |
727 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| || || |||| ||||||||||||||| || ||||| || || | |||||||| |||||||| |||| |
|
|
| T |
38460258 |
gttcgatcatgttgaaccggattatgggaaatttcgattgcagacttgttgtcacaaaacagattcatcgcataattcggagcaaagccaatttcagtca |
38460357 |
T |
|
| Q |
728 |
acaaccttcgcagccaaaggagctcacaaagacccttagccatcccccgaaattcagcttcagcactggataatgctacaaccttctgttttttactttt |
827 |
Q |
| |
|
||| |||| ||||| || |||||||| ||||||||||||||||| ||||| || ||||||||||| |||||||| ||||| || ||||| |||||||| |
|
|
| T |
38460358 |
acagtcttctaagccagagaagctcacatagacccttagccatccctcgaaactctgcttcagcacttgataatgcaacaactttttgtttcttactttt |
38460457 |
T |
|
| Q |
828 |
ccatgaaaccaaatt |
842 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
38460458 |
ccatgtaaccaaatt |
38460472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 586 - 652
Target Start/End: Original strand, 10670611 - 10670677
Alignment:
| Q |
586 |
agattttgtttaataaagtgccaatctacttccacatgtttggttcgatcatgttgaactggattgt |
652 |
Q |
| |
|
||||||| ||| ||||| || | |||||| ||||||||||| || ||||||||||| |||||||||| |
|
|
| T |
10670611 |
agattttcttttataaaatgtcgatctacctccacatgtttagtacgatcatgttgcactggattgt |
10670677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 12121207 - 12121447
Alignment:
| Q |
7 |
agatcattctttgcaacttttcgagcactagttgatgttgaacaaggtgatgtaatattaataacatacggtggttatctatcttacaaaggtaactcct |
106 |
Q |
| |
|
||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12121207 |
agatcattcctcgcaacttttcgagcacttgttgatgttgaacaaggtgatgtaatattaagaacatacagtggttatctatcttacaaaggtaactcct |
12121306 |
T |
|
| Q |
107 |
catgaagtaggtgattttcaagcagcagagcggtgataaatggttcaatttatgggagaaaatcgaaagggtggctaaggaagtagaat-gactgattct |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
12121307 |
catgaagcaggtgattttcaagcagcagagcggtgataaatggttcaa-----gggagaaaatcgaaaggttggctaaggaagtagaatggactgattct |
12121401 |
T |
|
| Q |
206 |
aaagaagtggaatgggtttaagacaaggaacctgaaggacaagggt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12121402 |
aaagaagtggaatgggtttaagacaaggaacctgaaggacaagggt |
12121447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 428 - 575
Target Start/End: Original strand, 18043375 - 18043522
Alignment:
| Q |
428 |
ctcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgag |
527 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||| |||| | ||||| |||||||||| |
|
|
| T |
18043375 |
ctcacaccaacacttcccctcaagttggtgcacagagatcttgaatgcccaacttatcaagtgagttgtaaaagtctctggtacatacaacttttgtgag |
18043474 |
T |
|
| Q |
528 |
tatatctgctaactggtcctcagatttaacaaatggaaattggattat |
575 |
Q |
| |
|
|||||||| ||| || || | |||||||||||||||||| || ||||| |
|
|
| T |
18043475 |
tatatctgataattgatctttagatttaacaaatggaaactgaattat |
18043522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 426 - 683
Target Start/End: Original strand, 15646266 - 15646523
Alignment:
| Q |
426 |
aactcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtg |
525 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||| ||| ||| ||||||||||| ||||||||| |||| | | || |||| |||||||| |
|
|
| T |
15646266 |
aactcatgccaacactccccctcaagttggtgagtagatatttctaatacccaacttgtctagtgagttgtgaaagactttactagatacagcttttgtt |
15646365 |
T |
|
| Q |
526 |
agtatatctgctaactggtcctcagatttaacaaatggaaattggattattttggtctccagattttgtttaataaagtgccaatctacttccacatgtt |
625 |
Q |
| |
|
| |||||||||| || || |||||| | || |||||||||| ||| || || ||| ||||||||||| ||||| || | ||| || || | ||| | |
|
|
| T |
15646366 |
aacatatctgctagttgatcttcagatctcacgaatggaaatttgatgatcttttcctcaagattttgtttgataaaatgtctatccacctcaatatgct |
15646465 |
T |
|
| Q |
626 |
tggttcgatcatgttgaactggattgtgagaaatgtctatagcagccttgttgtcaca |
683 |
Q |
| |
|
| || |||||||||||||| ||||| || || || || || || |||||||| ||||| |
|
|
| T |
15646466 |
tagtacgatcatgttgaacaggattatgcgagatttcaattgctgccttgttatcaca |
15646523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 428 - 833
Target Start/End: Original strand, 522497 - 522902
Alignment:
| Q |
428 |
ctcacgccaacactccccctcaagttggtgcacagagattctgaatgcccaacttgtcaagtgagttgaaaaagtttctgctgcatacggcttttgtgag |
527 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| || | |||||| ||||||||||||||| || || | |||| | || || ||||| || |
|
|
| T |
522497 |
ctcacaccaacactccccctcaagttggtgcatagatatcattaatgcctaacttgtcaagtgagctgtggaaaactttgctagaaactgcctttgtaag |
522596 |
T |
|
| Q |
528 |
tatatctgctaactggtcctcagatttaacaaatggaaattggattattttggtctccagattttgtttaataaagtgccaatctacttccacatgtttg |
627 |
Q |
| |
|
|| ||||| ||||| || ||||| |||||||| |||||| | || |||| || ||||||| ||| || || || | |||||| ||||||||||| |
|
|
| T |
522597 |
catgtctgccaactgatcttcagacttaacaaaaggaaatctaactactttgccttcaagattttctttgatgaaatgtcgatctacctccacatgttta |
522696 |
T |
|
| Q |
628 |
gttcgatcatgttgaactggattgtgagaaatgtctatagcagccttgttgtcacaaaatagtttcatttcacaacttggagcaaatccaatttctgtca |
727 |
Q |
| |
|
|| ||||| ||||| ||||| ||||| ||||| | || |||||||| || |||||||| | ||||||||| ||| |||| || |||||||| || | |
|
|
| T |
522697 |
gtacgatcgtgttgcactgggttgtgggaaatagcgatggcagccttattatcacaaaacaaattcatttcaacactaggagggaagccaatttcagtta |
522796 |
T |
|
| Q |
728 |
acaaccttcgcagccaaaggagctcacaaagacccttagccatcccccgaaattcagcttcagcactggataatgctacaaccttctgttttttactttt |
827 |
Q |
| |
|
||| |||| |||||||| || |||||||||||||||| ||| || | || |||||||||||||| |||||||| || ||||| || || || || || |
|
|
| T |
522797 |
gcaatcttctaagccaaagtagttcacaaagacccttagacattcctctgaactcagcttcagcacttgataatgccactaccttttgcttcttgctctt |
522896 |
T |
|
| Q |
828 |
ccatga |
833 |
Q |
| |
|
|||||| |
|
|
| T |
522897 |
ccatga |
522902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 621 - 683
Target Start/End: Complemental strand, 16015 - 15953
Alignment:
| Q |
621 |
atgtttggttcgatcatgttgaactggattgtgagaaatgtctatagcagccttgttgtcaca |
683 |
Q |
| |
|
|||||| || |||||||||||||||||||| |||| ||| |||||| |||||||||||||| |
|
|
| T |
16015 |
atgttttgtacgatcatgttgaactggattatgagctatgcttatagctgccttgttgtcaca |
15953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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