View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335-Insertion-4 (Length: 315)
Name: NF5335-Insertion-4
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 315
Target Start/End: Complemental strand, 2877544 - 2877241
Alignment:
| Q |
8 |
agatttatgatccaaagacatgtcattgctgtatgcacttcacaccttgtcataccaaataaatgttatagccttaaatgaaagtgatggtttgggtatt |
107 |
Q |
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| T |
2877544 |
agatttatgattcaaagacatgtcattg---tatgcacttcataccttgtcataccaaataaatgttatagccttaaatgaaagtgatggtttgggtatt |
2877448 |
T |
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| Q |
108 |
cttattccttttaactctaatatcatttgataactttgnnnnnnntatgtttctggcgaaaatttaactcttcacc---tgccacccaagtttagctttc |
204 |
Q |
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| T |
2877447 |
cttattccttttaactctaatatcatttgatgactttgaaaaaa-tatgtttctggcgaaaatttaactcttcaccacctgccacctaagtttagctttc |
2877349 |
T |
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| Q |
205 |
ttcacagctaggtagtgtcaacaaccacctctgatcatcatgcaaattacaaccataattacacggccttgtctaaaggatgccacaaaccaaacatatc |
304 |
Q |
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| T |
2877348 |
ttcacagctaggcagtgtcaacaaccacctccgatcatcatgcaa---acaaccataattacagggccttgtctaaaggatgccacaaaccaaacatatc |
2877252 |
T |
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| Q |
305 |
tcattgataat |
315 |
Q |
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| T |
2877251 |
tcactgataat |
2877241 |
T |
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