View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5335_high_15 (Length: 314)

Name: NF5335_high_15
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5335_high_15
NF5335_high_15
[»] chr3 (4 HSPs)
chr3 (13-299)||(11005507-11005793)
chr3 (4-299)||(11024073-11024368)
chr3 (16-299)||(11015073-11015356)
chr3 (58-299)||(47451524-47451771)
[»] chr4 (38 HSPs)
chr4 (77-275)||(48852901-48853099)
chr4 (77-299)||(45371717-45371939)
chr4 (58-299)||(48147337-48147584)
chr4 (58-214)||(49043792-49043948)
chr4 (57-261)||(48156052-48156262)
chr4 (58-143)||(7790432-7790517)
chr4 (77-240)||(50666561-50666733)
chr4 (77-179)||(49038521-49038623)
chr4 (58-214)||(49048179-49048334)
chr4 (77-134)||(48864396-48864453)
chr4 (77-272)||(37826633-37826840)
chr4 (81-278)||(45365867-45366070)
chr4 (86-192)||(48903255-48903364)
chr4 (77-143)||(7765994-7766060)
chr4 (77-143)||(7771747-7771813)
chr4 (156-258)||(43596153-43596255)
chr4 (77-142)||(7813830-7813895)
chr4 (77-143)||(7237386-7237452)
chr4 (77-143)||(7773468-7773534)
chr4 (77-143)||(7786816-7786882)
chr4 (77-143)||(7878735-7878801)
chr4 (77-142)||(7800990-7801055)
chr4 (77-134)||(7908663-7908720)
chr4 (81-134)||(45384539-45384592)
chr4 (86-147)||(48861636-48861697)
chr4 (77-138)||(48870917-48870978)
chr4 (77-138)||(48876221-48876282)
chr4 (77-138)||(48886603-48886664)
chr4 (216-289)||(49043977-49044050)
chr4 (216-277)||(48705170-48705231)
chr4 (85-133)||(50672860-50672908)
chr4 (148-187)||(7878048-7878087)
chr4 (81-120)||(48735058-48735097)
chr4 (176-251)||(48861505-48861580)
chr4 (77-142)||(7823322-7823387)
chr4 (148-277)||(45384618-45384747)
chr4 (83-120)||(48734178-48734215)
chr4 (86-134)||(47208238-47208286)
[»] chr6 (4 HSPs)
chr6 (58-299)||(21016017-21016258)
chr6 (217-274)||(21979420-21979477)
chr6 (84-131)||(21979278-21979325)
chr6 (88-128)||(14197337-14197377)
[»] chr5 (7 HSPs)
chr5 (57-277)||(9119975-9120201)
chr5 (77-275)||(42561976-42562174)
chr5 (91-143)||(179410-179462)
chr5 (60-131)||(29696600-29696671)
chr5 (80-134)||(29688490-29688544)
chr5 (224-282)||(29688336-29688394)
chr5 (62-134)||(29712069-29712141)
[»] chr8 (13 HSPs)
chr8 (85-134)||(4031577-4031626)
chr8 (153-290)||(4962244-4962385)
chr8 (154-278)||(12200553-12200677)
chr8 (154-278)||(12444981-12445105)
chr8 (216-278)||(12195535-12195597)
chr8 (216-278)||(12439963-12440025)
chr8 (77-134)||(15349244-15349301)
chr8 (79-134)||(4962161-4962219)
chr8 (158-272)||(15349100-15349214)
chr8 (77-134)||(12195685-12195742)
chr8 (77-134)||(12200703-12200760)
chr8 (77-134)||(12440113-12440170)
chr8 (77-134)||(12445131-12445188)
[»] chr7 (1 HSPs)
chr7 (77-134)||(48884185-48884242)
[»] chr1 (6 HSPs)
chr1 (77-269)||(24340634-24340829)
chr1 (77-269)||(24352999-24353194)
chr1 (77-129)||(24367531-24367583)
chr1 (77-134)||(24310577-24310634)
chr1 (77-134)||(24416139-24416196)
chr1 (77-126)||(24323139-24323188)


Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 299
Target Start/End: Original strand, 11005507 - 11005793
Alignment:
Q  13 atgaccacattttgtagagcatattggaggatcgtattgaatgcaaatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtat 112  Q
    |||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11005507 atgaccacattttgtaaagcatattggcggatcgtactgaatgcaaatgccatcaatagataagacaagagccttagtccaagacgaatgcactttgtat 11005606  T
Q  113 tctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11005607 tctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaa 11005706  T
Q  213 aaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattgacaaatcatggcgaaaag 299  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11005707 aaccatatggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattgacaaatcatggcgaaaag 11005793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 299
Target Start/End: Original strand, 11024073 - 11024368
Alignment:
Q  4 tccaagaaaatgaccacattttgtagagcatattggaggatcgtattgaatgcaaatgccatcaatagataagacaagagtcttagtccaagacgaatgc 103  Q
    ||||| || ||||||||||||||||||||||||||| ||||| || |||||| |||||  ||||||||||| ||||||||||||||||||||||||||||    
T  11024073 tccaataatatgaccacattttgtagagcatattgggggatcatactgaatgtaaatgtaatcaatagataggacaagagtcttagtccaagacgaatgc 11024172  T
Q  104 actttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaaatatccacaaatcacaatctataggtt 203  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  11024173 actttgtattctttcataacccatatttcaattgttacaccccccatagcccatagactgagaaattctccaaatatccacaaatcacaatccataggtt 11024272  T
Q  204 catgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattgacaaatcatggcgaaaag 299  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||    
T  11024273 catgatcaaaaccatctggaaaaggcatctccaaaagttccctttccactaaatcaaaggcaataataacatccattgataaatcattgcgaaaag 11024368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 299
Target Start/End: Original strand, 11015073 - 11015356
Alignment:
Q  16 accacattttgtagagcatattggaggatcgtattgaatgcaaatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattct 115  Q
    ||||| |||||||||||||||||| ||||  || | |||| ||||| |||||||||||| ||||||||| |||  |||||||||||||||||||||||||    
T  11015073 accactttttgtagagcatattgggggataatactcaatggaaatgtcatcaatagataggacaagagttttaacccaagacgaatgcactttgtattct 11015172  T
Q  116 ttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaac 215  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  11015173 ttcataacccatatttcaactgttccatcctccatagcccatagacttagaaattctccaaatatccacaaatcacaatctataggttcatagtcaaaac 11015272  T
Q  216 catctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattgacaaatcatggcgaaaag 299  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11015273 catctggaaaatgcatctccaaaagtttcctttccactaaatcaaagccaacaataacatccattgataaatcatggcgaaaag 11015356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 58 - 299
Target Start/End: Original strand, 47451524 - 47451771
Alignment:
Q  58 aatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatccc------ccata 151  Q
    ||||||||||||||  |  |||||||||||   |||||||||||  ||||||||||||||||| ||||||||||||| | | ||||         ||| |    
T  47451524 aatgccatcaataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaga 47451623  T
Q  152 gcccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttcca 251  Q
     ||| ||||||||||||||||||||||| ||||||| ||||||   |||||||||| |||||| ||||||| |||  ||  ||||||| ||| |||||||    
T  47451624 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttcca 47451723  T
Q  252 ctaaatcaaagccaacaataacatccattgacaaatcatggcgaaaag 299  Q
     |||||||||  || ||||||||| ||| || | |||||| |||||||    
T  47451724 ttaaatcaaatgcagcaataacattcatggatatatcatgacgaaaag 47451771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 77 - 275
Target Start/End: Complemental strand, 48853099 - 48852901
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaa 176  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||| |||||||||||  |||||| ||| |||||||||| ||    
T  48853099 acaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcatcccccatgacccatatacttagaaattctctaa 48853000  T
Q  177 atatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacat 275  Q
    ||| ||||||||| ||||   |||||||||| | |||| |||| || |||| || |||||||||||||||||||| |||||||||| | ||||||||||    
T  48852999 atacccacaaatcgcaataggtaggttcatggtaaaaatcatccggcaaagacaactctaaaagtttcctttccattaaatcaaaggccacaataacat 48852901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 77 - 299
Target Start/End: Original strand, 45371717 - 45371939
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaa 176  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||  | ||||||| ||||| ||||||| ||| |    
T  45371717 acaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtatcttccttcttagcccaaagactgagaaattttccga 45371816  T
Q  177 atatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatc 276  Q
    ||| ||| |||||||||| | ||||  || | ||||||||||| || |||| ||||||||||||||||| ||||| |||||||||| ||| |||||||      
T  45371817 atacccaaaaatcacaatatgtaggaccagggtcaaaaccatcaggcaaagacatctctaaaagtttccgttccattaaatcaaaggcaagaataacact 45371916  T
Q  277 cattgacaaatcatggcgaaaag 299  Q
    ||| || |||||||| |||||||    
T  45371917 catcgataaatcatgacgaaaag 45371939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 58 - 299
Target Start/End: Original strand, 48147337 - 48147584
Alignment:
Q  58 aatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa------ttgtttcatcccccata 151  Q
    ||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||| |||||||||||||      |  | ||||   |||||    
T  48147337 aatgccatcaatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactctgctattgtcatgatccata 48147436  T
Q  152 gcccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttcca 251  Q
     ||  |||||| ||||||| |||||||| |||||||| || || |  || |||| |  |||||||||||||||||||||||||||||||| |||||||||    
T  48147437 cccgttagactgagaaattgtccaaatacccacaaatgactatattcagattcaaggccaaaaccatctggaaaaggcatctctaaaagtctcctttcca 48147536  T
Q  252 ctaaatcaaagccaacaataacatccattgacaaatcatggcgaaaag 299  Q
     |||||||||  ||| |||||||||| |||  ||||||| | ||||||    
T  48147537 ttaaatcaaatgcaataataacatcccttgctaaatcattgtgaaaag 48147584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 58 - 214
Target Start/End: Original strand, 49043792 - 49043948
Alignment:
Q  58 aatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccat 157  Q
    |||| |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| | | |||| |    ||| ||||    
T  49043792 aatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatcattctgtctagtccat 49043891  T
Q  158 agactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaa 214  Q
    | |||||||| ||| ||||||| |||||||||||||||| |||||||||| ||||||    
T  49043892 acactaagaagttcaccaaatacccacaaatcacaatctgtaggttcatgttcaaaa 49043948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 57 - 261
Target Start/End: Original strand, 48156052 - 48156262
Alignment:
Q  57 aaatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat---ccc---ccat 150  Q
    |||||||||||||||  | ||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||| | ||||||   |||   | |     
T  48156052 aaatgccatcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattagcccaatcaac 48156151  T
Q  151 agcccatagactaagaaattctccaaatatccacaaatcacaatctat-aggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttc 249  Q
    |||||||| ||| |||||||||||||||| |||||||| ||||| ||| || |  ||| | ||||||||| |||||||||||||||||||||||||  ||    
T  48156152 agcccataaactgagaaattctccaaatacccacaaattacaat-tatcagttgtatggtgaaaaccatcaggaaaaggcatctctaaaagtttccgatc 48156250  T
Q  250 cactaaatcaaa 261  Q
    || |||||||||    
T  48156251 cattaaatcaaa 48156262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 7790517 - 7790432
Alignment:
Q  58 aatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 143  Q
    |||| |||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  7790517 aatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcat 7790432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 240
Target Start/End: Complemental strand, 50666733 - 50666561
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcc------cccatagcccatagactaagaaatt 170  Q
    |||||||| ||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||| |||| |       | |||||| ||| | ||||||| |    
T  50666733 acaagagttttagtccaagatgaatgcactttgtattcttacatcacccataattcaattgtatcattcacataatcaatagccgataaattaagaaact 50666634  T
Q  171 ctccaaatatccacaaatcacaatctataggttcatgatcaaa---accatctggaaaaggcatctctaaaag 240  Q
    ||| ||||| |||||||||||||| ||||||| ||||  ||||   ||||||||||| |||||||||||||||    
T  50666633 ctctaaatacccacaaatcacaatttataggtacatggacaaaatcaccatctggaagaggcatctctaaaag 50666561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 49038521 - 49038623
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaa 176  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||  ||  ||  | |||||||||||| ||| |||||||||| ||    
T  49038521 acaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaacggtagcacgctccatagcccatacactgagaaattctcgaa 49038620  T
Q  177 ata 179  Q
    |||    
T  49038621 ata 49038623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 58 - 214
Target Start/End: Original strand, 49048179 - 49048334
Alignment:
Q  58 aatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccat 157  Q
    |||| ||||| |||| || |||| |||||||||||| |||||||||||||| || |||||||| ||||||||||||| | | ||||||  | ||| ||||    
T  49048179 aatgacatcagtagaaaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaactatatcatcctgcttagtccat 49048278  T
Q  158 agactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaa 214  Q
    | ||| ||||| || || |||| |||||||||||||||| |||||| ||| ||||||    
T  49048279 acactgagaaactcacc-aatacccacaaatcacaatctgtaggttaatgttcaaaa 49048334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 48864453 - 48864396
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 134  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48864453 acaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48864396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 272
Target Start/End: Original strand, 37826633 - 37826840
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat------cccccatagcccatagactaagaaatt 170  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||| || || || ||| | ||        ||||| |||||||||||||||||||    
T  37826633 acaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaatt 37826732  T
Q  171 ctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaa----aa--ggcatctctaaaagtttcctttccactaaatcaaagcc 264  Q
    ||||||||| ||||||| || ||| |  ||| ||||  | |||| |||||||||    ||  || |||||||| ||||||||||||| ||||| |||| |    
T  37826733 ctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaactggaacgggtatctctaacagtttcctttccattaaattaaaggc 37826832  T
Q  265 aacaataa 272  Q
    ||||||||    
T  37826833 aacaataa 37826840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 81 - 278
Target Start/End: Original strand, 45365867 - 45366070
Alignment:
Q  81 gagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattg------tttcatcccccatagcccatagactaagaaattctcc 174  Q
    ||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||| ||      | ||||   |||||||||| | ||| | |||||||||    
T  45365867 gagtctttgtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctcc 45365966  T
Q  175 aaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataaca 274  Q
    ||||| ||||||| |||||||   ||||||| | | |||  ||||||||||| | || |  |||||||||||||| | ||||||||||  || |||||||    
T  45365967 aaatacccacaaaccacaatcgtgaggttcacggttaaactcatctggaaaatgaatataaaaaagtttcctttcgattaaatcaaaggaaataataaca 45366066  T
Q  275 tcca 278  Q
    ||||    
T  45366067 tcca 45366070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 48903364 - 48903255
Alignment:
Q  86 ttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatc---ccccatagcccatagactaagaaattctccaaatatcc 182  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||| | | | |||     ||| ||||||||| ||||||||||||||||||| ||    
T  48903364 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatcgtaatccaaagcccataggctaagaaattctccaaataccc 48903265  T
Q  183 acaaatcaca 192  Q
    | ||||||||    
T  48903264 ataaatcaca 48903255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 7766060 - 7765994
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 143  Q
    ||||| ||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  7766060 acaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcat 7765994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 7771813 - 7771747
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 143  Q
    |||||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  7771813 acaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcat 7771747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 156 - 258
Target Start/End: Original strand, 43596153 - 43596255
Alignment:
Q  156 atagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaa 255  Q
    |||||||||||||||| ||||||| ||||| |||||||| | |||| ||||  ||||||||||| |||||| |||||||||| ||||| ||||| | |||    
T  43596153 atagactaagaaattccccaaatacccacatatcacaatttttaggatcatagtcaaaaccatcgggaaaaagcatctctaagagtttgctttcaattaa 43596252  T
Q  256 atc 258  Q
    |||    
T  43596253 atc 43596255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 7813895 - 7813830
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttca 142  Q
    |||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||| |||||    
T  7813895 acaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaattctttca 7813830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 7237386 - 7237452
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 143  Q
    |||||||| ||||||||| ||||||||| ||||||||||||||| ||||||||| ||||||| ||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatattacaattgtatcat 7237452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 7773468 - 7773534
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 143  Q
    |||||||  ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  7773468 acaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcat 7773534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 7786882 - 7786816
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 143  Q
    |||||||||||| |||||||  ||||||| |||||||||||||| ||||||||||||||||| ||||    
T  7786882 acaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcat 7786816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 7878801 - 7878735
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 143  Q
    |||||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  7878801 acaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcat 7878735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 7801055 - 7800990
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttca 142  Q
    |||||||| ||| |||||||||||||||||||||| |||||||  ||||||||||||||| |||||    
T  7801055 acaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaattctttca 7800990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 7908720 - 7908663
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 134  Q
    |||||||| ||| ||||||| ||||||||||||||||||||||| |||||||||||||    
T  7908720 acaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 45384539 - 45384592
Alignment:
Q  81 gagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 134  Q
    ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||    
T  45384539 gagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaa 45384592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 48861697 - 48861636
Alignment:
Q  86 ttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccc 147  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||||| ||| ||||||||    
T  48861697 ttagtccaagacaaatgcactttgtattcttttattacccatatttcaaatgtatcatcccc 48861636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 48870978 - 48870917
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgt 138  Q
    ||||||||||| ||||||||||| | |||||||||||| ||||| ||||| |||||||||||    
T  48870978 acaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgt 48870917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 48876282 - 48876221
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgt 138  Q
    ||||||||||| ||||||||||| | |||||||||||| ||||| ||||| |||||||||||    
T  48876282 acaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgt 48876221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 48886664 - 48886603
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgt 138  Q
    ||||||||||| ||||||||||| | |||||||||||| ||||| ||||| |||||||||||    
T  48886664 acaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgt 48886603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 49043977 - 49044050
Alignment:
Q  216 catctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattgacaaatca 289  Q
    ||||||| ||||  || ||||||||||||||||| | |||||||||| |||||||||||| |||||| ||||||    
T  49043977 catctggcaaagatatgtctaaaagtttcctttcaattaaatcaaaggcaacaataacattcattgataaatca 49044050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 48705170 - 48705231
Alignment:
Q  216 catctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatcc 277  Q
    ||||||| ||| |||| || ||||||| |||||||| |||||||||| ||||||||||||||    
T  48705170 catctggcaaaagcatatcaaaaagttccctttccattaaatcaaaggcaacaataacatcc 48705231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 50672908 - 50672860
Alignment:
Q  85 cttagtccaagacgaatgcactttgtattctttcataacccatatttca 133  Q
    ||||||||| |||||||||| |||||||| |||||| ||||||||||||    
T  50672908 cttagtccacgacgaatgcaatttgtattgtttcatcacccatatttca 50672860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 7878087 - 7878048
Alignment:
Q  148 catagcccatagactaagaaattctccaaatatccacaaa 187  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  7878087 catagcccatagactgagaaattctccaaatacccacaaa 7878048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 48735058 - 48735097
Alignment:
Q  81 gagtcttagtccaagacgaatgcactttgtattctttcat 120  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  48735058 gagttttagtccaagacgaattcactttgtattctttcat 48735097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 48861580 - 48861505
Alignment:
Q  176 aatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttcca 251  Q
    |||| |||||||||||||| | |||||||||| ||||||  ||   |||||| |||||||||||||||| ||||||    
T  48861580 aatacccacaaatcacaatatgtaggttcatggtcaaaattatggagaaaagacatctctaaaagtttcttttcca 48861505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 7823387 - 7823322
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttca 142  Q
    |||||||| ||| |||||||| ||||||||||||| ||||| |  ||||||||||| ||| |||||    
T  7823387 acaagagttttattccaagacaaatgcactttgtaatctttaaacacccatatttccattctttca 7823322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 45384618 - 45384747
Alignment:
Q  148 catagcccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctt 247  Q
    |||||| || | ||| |||||||||||||||| ||||||| |||||||  |||||||| | | |||  ||||||| ||| |||| |  ||||||||| ||    
T  45384618 catagctcaaaaactgagaaattctccaaatacccacaaaccacaatcggtaggttcacggttaaactcatctggcaaatgcatataaaaaagtttcatt 45384717  T
Q  248 tccactaaatcaaagccaacaataacatcc 277  Q
    || | ||||||||   ||| ||||||||||    
T  45384718 tcgattaaatcaacagcaataataacatcc 45384747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 48734215 - 48734178
Alignment:
Q  83 gtcttagtccaagacgaatgcactttgtattctttcat 120  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  48734215 gtctttgtccaatacgaatgcactttgtattctttcat 48734178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 134
Target Start/End: Complemental strand, 47208286 - 47208238
Alignment:
Q  86 ttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 134  Q
    ||||||||||| || || ||||||||||||||||| |||| ||||||||    
T  47208286 ttagtccaagatgattgtactttgtattctttcatcacccttatttcaa 47208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 299
Target Start/End: Complemental strand, 21016258 - 21016017
Alignment:
Q  58 aatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccat 157  Q
    |||| |||||||||| ||   |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | |||    |||||| ||||    
T  21016258 aatgtcatcaatagagaaagtaagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaactatatcactatccatagtccat 21016159  T
Q  158 agactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaat 257  Q
    | ||| | |||||| || |||| |||||||||||||| |||||||||||| || | | |||| || |||| ||| || |||||||| ||||| |  ||||    
T  21016158 acactcaaaaattcaccgaatacccacaaatcacaatatataggttcatgttccatatcatccggcaaagacatgtcgaaaagttttctttctatcaaat 21016059  T
Q  258 caaagccaacaataacatccattgacaaatcatggcgaaaag 299  Q
    ||||| |||  ||||| | |||||| |||||||| |||||||    
T  21016058 caaaggcaatgataactttcattgataaatcatgacgaaaag 21016017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 21979420 - 21979477
Alignment:
Q  217 atctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataaca 274  Q
    |||||||| ||| ||||| |||||||||||||| | |||||||||| |||||||||||    
T  21979420 atctggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaataaca 21979477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 21979278 - 21979325
Alignment:
Q  84 tcttagtccaagacgaatgcactttgtattctttcataacccatattt 131  Q
    ||||| ||||||| ||| ||||||||||||||||||| ||||||||||    
T  21979278 tcttattccaagaggaacgcactttgtattctttcatcacccatattt 21979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  88 agtccaagacgaatgcactttgtattctttcataacccata 128  Q
    ||||||||| ||||||| ||||||||||||||| |||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 277
Target Start/End: Complemental strand, 9120201 - 9119975
Alignment:
Q  57 aaatgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat------cccccat 150  Q
    ||||||| |||||||| || |||||||| ||  ||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||         ||||    
T  9120201 aaatgccgtcaatagacaaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccat 9120102  T
Q  151 agcccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttcc 250  Q
    |||||||| ||| |||||||||||||||| ||||| |||||||| | ||| ||||| ||||| | ||  ||| | ||| ||||| ||||||| | |||      
T  9120101 agcccatatactgagaaattctccaaatacccacacatcacaatttgtagcttcataatcaatatcaattgggagaggaatctcaaaaagttccgttttg 9120002  T
Q  251 actaaatcaaagccaacaataacatcc 277  Q
    | |||||||||| ||| ||||| ||||    
T  9120001 attaaatcaaaggcaagaataagatcc 9119975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 275
Target Start/End: Original strand, 42561976 - 42562174
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatcccccatagcccatagactaagaaattctccaa 176  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| |||||||| ||||   | || |||| || |  ||||||||| |||||| ||| ||    
T  42561976 acaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaacattatcgtccctcaaaatccatagactgagaaatcctctaa 42562075  T
Q  177 atatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacat 275  Q
    ||| ||| ||| ||||| || | |  | || || || | ||  ||||| | | ||||||| |||||||||||||  ||||| |||| ||||||||||||    
T  42562076 atacccaaaaaccacaacctttggaattataattaatatcaattggaagaagaatctctagaagtttcctttccgttaaatgaaaggcaacaataacat 42562174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 179462 - 179410
Alignment:
Q  91 ccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 143  Q
    |||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcat 179410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 29696671 - 29696600
Alignment:
Q  60 tgccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatattt 131  Q
    ||||||||| ||| | ||||||||||||||||||||| || ||||| ||||||| || ||| ||||||||||    
T  29696671 tgccatcaaaagacaggacaagagtcttagtccaagaggattgcacattgtatttttccatcacccatattt 29696600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 29688544 - 29688490
Alignment:
Q  80 agagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 134  Q
    |||||||| ||||||||||| ||||| ||||||| |||||| |||||||||||||    
T  29688544 agagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaa 29688490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 29688394 - 29688336
Alignment:
Q  224 aaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattga 282  Q
    ||||||| ||||| |||||||||||||  ||||| ||| ||||||||||||| ||||||    
T  29688394 aaaggcaactctataagtttcctttccgttaaatgaaatccaacaataacattcattga 29688336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 29712069 - 29712141
Alignment:
Q  62 ccatcaatagataagacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 134  Q
    ||||||| ||| || |||||||||||||||||||| ||   ||| ||||||| || ||| |||||||||||||    
T  29712069 ccatcaaaagacaaaacaagagtcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaa 29712141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 4031577 - 4031626
Alignment:
Q  85 cttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 134  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4031577 cttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 4031626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 290
Target Start/End: Original strand, 4962244 - 4962385
Alignment:
Q  153 cccatagactaagaaattctccaaatatccacaaatcacaatctatag----gttcatgatcaaaaccatctggaaaaggcatctctaaaagtttccttt 248  Q
    |||||||||| |||||||||||||||| ||||||| || ||  || ||    ||||||  |||||| |||  |||| |||||||||||| | ||||||||    
T  4962244 cccatagactgagaaattctccaaatacccacaaaccataacttacagacaggttcatagtcaaaatcattgggaagaggcatctctaacaatttccttt 4962343  T
Q  249 ccactaaatcaaagccaacaataacatccattgacaaatcat 290  Q
    ||| |||||||||| ||| ||||||||||| ||| |||||||    
T  4962344 ccattaaatcaaagacaataataacatccactgataaatcat 4962385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 278
Target Start/End: Complemental strand, 12200677 - 12200553
Alignment:
Q  154 ccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccact 253  Q
    |||||||||||||||||||||||||| ||||||| || |||  ||| |  |||| |  ||| ||||||||| | | |||||||  | ||||||||||| |    
T  12200677 ccatagactaagaaattctccaaatacccacaaaccataatacataagaccatggttgaaatcatctggaagaagtatctctaccaatttcctttccatt 12200578  T
Q  254 aaatcaaagccaacaataacatcca 278  Q
    ||||||||| |||||||||| ||||    
T  12200577 aaatcaaaggcaacaataacttcca 12200553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 278
Target Start/End: Complemental strand, 12445105 - 12444981
Alignment:
Q  154 ccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccact 253  Q
    |||||||||||||||||||||||||| ||||||| || |||  ||| |  |||| |  ||| ||||||||| | | |||||||  | ||||||||||| |    
T  12445105 ccatagactaagaaattctccaaatacccacaaaccataatacataagaccatggttgaaatcatctggaagaagtatctctaccaatttcctttccatt 12445006  T
Q  254 aaatcaaagccaacaataacatcca 278  Q
    ||||||||| |||||||||| ||||    
T  12445005 aaatcaaaggcaacaataacttcca 12444981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 12195597 - 12195535
Alignment:
Q  216 catctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatcca 278  Q
    ||||||||| ||| |||||||| | ||||||||||| |||||||||| |||||||||| ||||    
T  12195597 catctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaataacttcca 12195535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 12440025 - 12439963
Alignment:
Q  216 catctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatcca 278  Q
    ||||||||| ||| |||||||| | ||||||||||| |||||||||| |||||||||| ||||    
T  12440025 catctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaataacttcca 12439963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 15349301 - 15349244
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 134  Q
    |||||| |||| |||||||| || | |||||||||||||||||| |||||||||||||    
T  15349301 acaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 4962161 - 4962219
Alignment:
Q  79 aagagtcttagtccaagacga---atgcactttgtattctttcataacccatatttcaa 134  Q
    ||||||||||||||| |||||   ||||| ||||||||||||||| |||||||||||||    
T  4962161 aagagtcttagtccacgacgacgaatgcagtttgtattctttcatcacccatatttcaa 4962219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 272
Target Start/End: Complemental strand, 15349214 - 15349100
Alignment:
Q  158 agactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaat 257  Q
    ||||||| |||||| ||||| | ||||||| |||||||   ||  ||||| |||||| ||||||||  ||||||||| || |||||||||||   |||||    
T  15349214 agactaaaaaattcgccaaagacccacaaaccacaatcaccagcatcatgttcaaaatcatctggaggaggcatctcaaacagtttcctttcgtttaaat 15349115  T
Q  258 caaagccaacaataa 272  Q
    ||||  |||||||||    
T  15349114 caaatgcaacaataa 15349100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 12195742 - 12195685
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 134  Q
    |||||||||||||||||||| || ||   |||||||||||||||  ||||||||||||    
T  12195742 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaa 12195685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 12200760 - 12200703
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 134  Q
    ||||||||||| |||||||||||| ||| |||||||  ||||||  ||||||||||||    
T  12200760 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 12200703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 12440170 - 12440113
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 134  Q
    |||||||||||||||||||| || ||   |||||||||||||||  ||||||||||||    
T  12440170 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaa 12440113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 12445188 - 12445131
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 134  Q
    ||||||||||| |||||||||||| ||| |||||||  ||||||  ||||||||||||    
T  12445188 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 12445131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 48884242 - 48884185
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 134  Q
    |||||||||||||||||||||  ||||||||||||||||||||| ||| |||||||||    
T  48884242 acaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaa 48884185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 269
Target Start/End: Complemental strand, 24340829 - 24340634
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttc---atcccccatagcccatagactaagaaattctc 173  Q
    |||||||| ||||||||||| || |||||||| ||||||||||| ||||| || ||||  || ||   |||| ||||| |||||||||| |||||| |||    
T  24340829 acaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatcctc 24340730  T
Q  174 caaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaa 269  Q
     | ||| ||| ||| ||||| |  ||    |||| |||||| ||||||| | ||| ||||||| |||||||||||| ||||| |||||| ||||||    
T  24340729 tacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctctacaagtttcctttcgactaattcaaaggcaacaa 24340634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 269
Target Start/End: Complemental strand, 24353194 - 24352999
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttc---atcccccatagcccatagactaagaaattctc 173  Q
    |||||||| ||||||||||| || |||||||| ||||||||||| ||||| || ||||  || ||   |||| ||||| |||||||||| |||||| |||    
T  24353194 acaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatcctc 24353095  T
Q  174 caaatatccacaaatcacaatctataggttcatgatcaaaaccatctggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaa 269  Q
     | ||| ||| ||| ||||| |  ||    |||| |||||| ||||||| | ||| ||||||| |||||||||||| ||||| |||||| ||||||    
T  24353094 tacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctctacaagtttcctttcgactaattcaaaggcaacaa 24352999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 24367583 - 24367531
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatat 129  Q
    |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||    
T  24367583 acaagagttttagtccaagacgaatgcactttgtattcttccattacccatat 24367531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 24310634 - 24310577
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 134  Q
    |||||||| ||| ||||||| || |||||||||||||||||||| |||||||| ||||    
T  24310634 acaagagttttactccaagaagactgcactttgtattctttcatcacccatatatcaa 24310577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 24416196 - 24416139
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 134  Q
    |||||||| ||||||||||| || ||| |||||||||||||||| |||||||| ||||    
T  24416196 acaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaa 24416139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 24323188 - 24323139
Alignment:
Q  77 acaagagtcttagtccaagacgaatgcactttgtattctttcataaccca 126  Q
    |||||||| |||||| |||| || |||||||||||||||||||| |||||    
T  24323188 acaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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