View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_high_18 (Length: 276)
Name: NF5335_high_18
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_high_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 5119082 - 5119345
Alignment:
| Q |
13 |
aaaatcgtttaggtaaagaggagaattccaatcgaatatccaatgggcctctttcctatccaaaatgtttccaccaatcaacaacgtaactcaagcacat |
112 |
Q |
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| T |
5119082 |
aaaaccgtttggataaagagcagaattccaaacgaatatccaatgggcctctttcctatccaaaatgtttccaccaatcaacaacgtaactcaagcacat |
5119181 |
T |
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| Q |
113 |
tcattgaaacatcacgcacgtgcgtgtttcacaatcactgttctggtttcaatcttcaccttgtttcactcaaattccttatcagagaatgattccatag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5119182 |
tcattgaaacatcacgcacgtgcgtgtttcacaatcactgttctggtttcaatcttcaccttgtttcactcaaattccttaacagagaatgattccatag |
5119281 |
T |
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| Q |
213 |
catccaagaatctttcaaaccaaactcatcaaaatcaaatctatatctatttatcacaactttt |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5119282 |
catccaagaatctttcaaaccaaactcatcaaaatcaaatctatatctatttatcacaactttt |
5119345 |
T |
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