View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_high_22 (Length: 249)
Name: NF5335_high_22
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 82 - 211
Target Start/End: Original strand, 38792128 - 38792257
Alignment:
| Q |
82 |
gccaatcatcaccggaacaaccaatcatgcagaccctcatgtcgtgactgcagaaaatcagacaacagttcaaactaaaaacatcgtaacgacaatgtaa |
181 |
Q |
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| T |
38792128 |
gccaatcatcaccggaacaaccaatcatgcagactctcatgtcgtgactgcagaaaaccagacaacagttcaaactaaaaacatcgtaacgacaatgtaa |
38792227 |
T |
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| Q |
182 |
tcttggcttttgatgtctggatcattcaac |
211 |
Q |
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| T |
38792228 |
tcttggcttttgatggctggatcattcaac |
38792257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 407932 - 407991
Alignment:
| Q |
179 |
taatcttggcttttgatgtctggatcattcaacttgtgtctctatgatgattatgttgat |
238 |
Q |
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| T |
407932 |
taatcttggcttttgatggctggatcattcaacttatgtctctgtgatgattgtgttgat |
407991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 416010 - 415951
Alignment:
| Q |
179 |
taatcttggcttttgatgtctggatcattcaacttgtgtctctatgatgattatgttgat |
238 |
Q |
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| T |
416010 |
taatcttggcttttgatggctggatcattcaacttatgtctctgtgatgattgtgttgat |
415951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Original strand, 6457721 - 6457759
Alignment:
| Q |
188 |
cttttgatgtctggatcattcaacttgtgtctctatgat |
226 |
Q |
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| T |
6457721 |
cttttgatggctggatcattcaacttgcgtctctatgat |
6457759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 49962806 - 49962756
Alignment:
| Q |
188 |
cttttgatgtctggatcattcaacttgtgtctctatgatgattatgttgat |
238 |
Q |
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| T |
49962806 |
cttttgatggctggatcattcaacttgcgtctctaagattattgtgttgat |
49962756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 24184414 - 24184473
Alignment:
| Q |
179 |
taatcttggcttttgatgtctggatcattcaacttgtgtctctatgatgattatgttgat |
238 |
Q |
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| T |
24184414 |
taatcttggcttttgatggctggatcattcaacttatgtctctgtgatgattgtgttgat |
24184473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 24357865 - 24357806
Alignment:
| Q |
179 |
taatcttggcttttgatgtctggatcattcaacttgtgtctctatgatgattatgttgat |
238 |
Q |
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| T |
24357865 |
taatcttggcttttgatggctggatcattcaacttatgtctctgtgatgattgtgttgat |
24357806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 24345592 - 24345535
Alignment:
| Q |
179 |
taatcttggcttttgatgtctggatcattcaacttgtgtctctatgatgattatgttgat |
238 |
Q |
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| T |
24345592 |
taatcttggcttttgatggctggatcattcaacttatgtctc--tgatgattgtgttgat |
24345535 |
T |
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