View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_high_24 (Length: 248)
Name: NF5335_high_24
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 7653418 - 7653188
Alignment:
| Q |
1 |
cagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtgttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
7653418 |
cagtagctatcgcacaatcgtcgagtcgccgtgaaacagtgttccatcttcgtcgccgcgaaatcgtaatttctaggtaaatcttctaatctctgtgttt |
7653319 |
T |
|
| Q |
101 |
ttcaattgtttaattgtttttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaattgtaattgttataggtaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7653318 |
ttcaattgtttaattgtttttgattttgaattgttctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaattttaattgttataggtaa |
7653219 |
T |
|
| Q |
201 |
attgattttcgttttttattttgaatctgtg |
231 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |
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|
| T |
7653218 |
attgattttcgtttttgattttgaatctgtg |
7653188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 9109728 - 9109680
Alignment:
| Q |
54 |
cgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtgttttt |
102 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| | |||||||||||||||| |
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| T |
9109728 |
cgccgcgaaatcgtaatttctaggtaaatcctgtaatctctgtgttttt |
9109680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 226
Target Start/End: Complemental strand, 21903199 - 21902964
Alignment:
| Q |
5 |
agctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtgtttttca |
104 |
Q |
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|||||||||||| ||| ||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21903199 |
agctatcgcacagtcgccgagtcgccgtgaaaccgtgttccgtcttcgtcaccgcgaaatcgtaatttctaggtaaatcttctaatctctgtgtttttca |
21903100 |
T |
|
| Q |
105 |
attgtttaattgttttt--------------gattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaattgtaattg |
190 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||| ||||||||||||| |||| ||||||||||||||||||| ||||| |
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| T |
21903099 |
attgtttaattgttttttatttttcgtttttgattttgaattgttctaggtaaattttaattgtaattatcaagtttgtgttgaatcgtaattttaatta |
21903000 |
T |
|
| Q |
191 |
ttataggtaaattgattttcgttttttattttgaat |
226 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
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|
| T |
21902999 |
ttataggtaaattgattttcgtttttgattttgaat |
21902964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 24 - 231
Target Start/End: Original strand, 33172191 - 33172412
Alignment:
| Q |
24 |
agtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtgtttttcaattgtttaattgttt---- |
119 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33172191 |
agtcgccgtgaaaccttgttccgtcttcatcgccgcgaaatcgtaatttctaggtaaatcttctaatctctgtgtttttcaattgtttaattgtttttta |
33172290 |
T |
|
| Q |
120 |
----------ttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaattgtaattgttataggtaaattgatttt |
209 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
33172291 |
tttttcgtttttgattttgaattgttctaggtaaattttaattgtaattatcaactttgtgtagaatcgtaattttaattgttataagtaaattgatttt |
33172390 |
T |
|
| Q |
210 |
cgttttttattttgaatctgtg |
231 |
Q |
| |
|
||||||| |||||||||||||| |
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|
| T |
33172391 |
cgtttttgattttgaatctgtg |
33172412 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 11362596 - 11362816
Alignment:
| Q |
5 |
agctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtgtttttca |
104 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
11362596 |
agctatcgcacaatcgccgagtcgccgtgaaaccatgttcc-tcttcgtcgctgcgaaatcgtaatttctaggtaaatcttctaatctctgtgtttttca |
11362694 |
T |
|
| Q |
105 |
attgtttaattgttt-------------ttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaattgtaattgt |
191 |
Q |
| |
|
||||||||||||||| |||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||| |||||| ||||||| |
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|
| T |
11362695 |
attgtttaattgttttttattttcgtttttgattttgaattgttgtaggtaaattttaattgtaattatcaactttgtgttgaatggtaattttaattgt |
11362794 |
T |
|
| Q |
192 |
tataggtaaattgattttcgtt |
213 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
11362795 |
tataggtaaattgattttcgtt |
11362816 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 5 - 213
Target Start/End: Original strand, 4059548 - 4059765
Alignment:
| Q |
5 |
agctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtgtttttca |
104 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| | || ||| ||| | ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4059548 |
agctatcgcacaatcgccgagtcgccgtgaaaccatgtt----cctcttcgtcgcgacatcgtaatttctaggtaaatcttctaatctctgtgtttttca |
4059643 |
T |
|
| Q |
105 |
attgtttaattgttt-------------ttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaattgtaattgt |
191 |
Q |
| |
|
||||||||||||||| |||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||| |||||| ||||||| |
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|
| T |
4059644 |
attgtttaattgttttttattttcgtttttgattttgaattgttgtaggtaaattttaattgtaattatcaactttgtgttgaatggtaattttaattgt |
4059743 |
T |
|
| Q |
192 |
tataggtaaattgattttcgtt |
213 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
4059744 |
tataggtaaattgattttcgtt |
4059765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 20592461 - 20592339
Alignment:
| Q |
5 |
agctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtgtttttca |
104 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| | |||||||||||||||||| |
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|
| T |
20592461 |
agctatcgcacattcgccgagtcgccgtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatcctgtaatctctgtgtttttca |
20592362 |
T |
|
| Q |
105 |
attgtttaattgtttttgatttt |
127 |
Q |
| |
|
||||||||||| ||||| ||||| |
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|
| T |
20592361 |
attgtttaattattttttatttt |
20592339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 20592337 - 20592297
Alignment:
| Q |
116 |
gtttttgattttgaattgctctaggtaaactttaattgtaa |
156 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
20592337 |
gtttttgattttgaattgttctaggtaaattttaatcgtaa |
20592297 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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