View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5335_high_26 (Length: 247)
Name: NF5335_high_26
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_high_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7521535 - 7521296
Alignment:
| Q |
1 |
tttcctattccaagtggcatagaagttaagttatcacaaccatccaactcaagatgtctaagacttaccaacttccaaagatctttgggcaactctctca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7521535 |
tttcctattccaagtggcatagaagttaagttatcacaatcatccaactcaagatgtctaagaattaccaacttccaaagatctttgggcaactctctca |
7521436 |
T |
|
| Q |
101 |
atttagaacaccaattgagtaaaagagtctccaagttaactaattcagttatagaccttgggagctcttcaaccttaaaacaacaagaaagatcaagata |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7521435 |
atttagaacacctattgagtaaaagagtctccaagttaactaattcagttatagaccttgggagctcttcaaccttaaaacaacaagaaagatcaagata |
7521336 |
T |
|
| Q |
201 |
ccttagctgtttcattctaccaatacaagattgaatattc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7521335 |
ccttagctgtttcattctaccaatacaagatggaatattc |
7521296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 7127657 - 7127896
Alignment:
| Q |
1 |
tttcctattccaagtggcatagaagttaagttatcacaaccatccaactcaagatgtctaagacttaccaacttccaaagatctttgggcaactctctca |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7127657 |
tttcctattccacgtggcatagaagttaagttatcacaatcatccaactcaagatgtctaaggcttaccaacttccaaagatctttgggcaactctttca |
7127756 |
T |
|
| Q |
101 |
atttagaacaccaattgagtaaaagagtctccaagttaactaattcagttatagaccttgggagctcttcaaccttaaaacaacaagaaagatcaagata |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7127757 |
atttagaacacctattgagtaaaagagtctccaagttaactaattcagttatagaccttgggagctcttcaaccataaaacaacaagaaagatcaagata |
7127856 |
T |
|
| Q |
201 |
ccttagctgtttcattctaccaatacaagattgaatattc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7127857 |
ccttagctgtttcattctaccaatacaagatggaatattc |
7127896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7495877 - 7495638
Alignment:
| Q |
1 |
tttcctattccaagtggcatagaagttaagttatcacaaccatccaactcaagatgtctaagacttaccaacttccaaagatctttgggcaactctctca |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7495877 |
tttcctattccacgtggcatagaagttaagttatgacaaagatccaactcaagatgtctaagacttaccaacttccaaagatctttgggcaactctctca |
7495778 |
T |
|
| Q |
101 |
atttagaacaccaattgagtaaaagagtctccaagttaactaattcagttatagaccttgggagctcttcaaccttaaaacaacaagaaagatcaagata |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7495777 |
atttagaacacctattgagtaaaagagtctccaagttaactaattcagttatagaccttgggagctcttcaaccataaaacaacaagaaagatcaagata |
7495678 |
T |
|
| Q |
201 |
ccttagctgtttcattctaccaatacaagattgaatattc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7495677 |
ccttagctgtttcattctaccaatacaagatggaatattc |
7495638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7529600 - 7529361
Alignment:
| Q |
1 |
tttcctattccaagtggcatagaagttaagttatcacaaccatccaactcaagatgtctaagacttaccaacttccaaagatctttgggcaactctctca |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7529600 |
tttcctattccacgtggcatagaagttaagttatgacaataatccaactcaagatgtctaagacttactaacttccaaagatctttgggcaactctctca |
7529501 |
T |
|
| Q |
101 |
atttagaacaccaattgagtaaaagagtctccaagttaactaattcagttatagaccttgggagctcttcaaccttaaaacaacaagaaagatcaagata |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7529500 |
atttagaacacctattgagtaaaagagtctccaagttaactaattcagttatagaccttgggagctcttcaaccataaaacaacaagaaagatcaagata |
7529401 |
T |
|
| Q |
201 |
ccttagctgtttcattctaccaatacaagattgaatattc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7529400 |
ccttagctgtttcattctaccaatacaagatggaatattc |
7529361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 7720932 - 7721167
Alignment:
| Q |
1 |
tttcctattccaagtggcatagaagttaagttatcacaaccatccaactcaagatgtctaagacttaccaacttccaaagatctttgggcaactctctca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || ||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7720932 |
tttcctattccaattggcatagaagttaagtcatggcaataatccaactcaagatgtcgaagacttaccaacttctaaagatctttgggcaactctctca |
7721031 |
T |
|
| Q |
101 |
atttagaacaccaattgagtaaaagagtctccaagttaactaattcagttatagaccttgggagctcttcaaccttaaaacaacaagaaagatcaagata |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || |||||||||||| |||||||| |
|
|
| T |
7721032 |
atttagaacaaaaattgagtaaaagagtctccaagttaattaattcagttatagaccttgggagctcctcaaccatatcacaacaagaaaggtcaagata |
7721131 |
T |
|
| Q |
201 |
ccttagctgtttcattctaccaatacaagattgaat |
236 |
Q |
| |
|
||||| |||||||| || ||||||| |||| |||| |
|
|
| T |
7721132 |
tcttagatgtttcatccttccaatactagatggaat |
7721167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 7483478 - 7483237
Alignment:
| Q |
1 |
tttcctattccaagtggcatagaagttaagttatcacaaccatccaactcaagatgtctaagacttaccaacttccaaagatctttgggcaactctctca |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||| | |||||||||||||||||||||||| ||| |
|
|
| T |
7483478 |
tttcctattccacgtggcatagaagttaagtcatcacaataatccaactcaagatgcctaagtcttacccatttccaaagatctttgggcaactctttca |
7483379 |
T |
|
| Q |
101 |
atttagaacaccaattgagtaaaagagtctccaagttaactaattcagttatagaccttgggagctcttcaaccttaaaacaacaagaaagatcaagata |
200 |
Q |
| |
|
| | || ||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| | |||| ||||||| |||||||| |
|
|
| T |
7483378 |
agtgagtacaccaattaagtaaaagagtctccaagttaactaaatcagttattgaccttgggagctcctcaaccattctacaataagaaaggtcaagata |
7483279 |
T |
|
| Q |
201 |
ccttagctgtttcattctaccaatacaagattgaatattctt |
242 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
7483278 |
ccttagatgtttcattctaccaatacaagatggaatattctt |
7483237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 7717102 - 7717336
Alignment:
| Q |
1 |
tttcctattccaagtggcatagaagttaagttatcacaaccatccaactcaagatgtctaagacttaccaacttccaaagatctttgggcaactctctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7717102 |
tttcctattccaagtggcatagaagttaagttattacaatcatccaactcaagatgtctaagacttaccaacttccaaatatctttgggcaactctctca |
7717201 |
T |
|
| Q |
101 |
atttagaacaccaattgagtaaaagagtctccaagttaactaattcagttatagaccttgggagctcttcaaccttaaaacaacaagaaagatcaagata |
200 |
Q |
| |
|
| | | |||| ||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
7717202 |
agtgactacacgaattgagcaaaagagtctccaagttaaataattgagttatagacctt-ggagctcttcaaccttataacaatgagaaagatcacaata |
7717300 |
T |
|
| Q |
201 |
ccttagctgtttcattctaccaatacaagattgaat |
236 |
Q |
| |
|
||||| |||||||| || ||||||| |||| |||| |
|
|
| T |
7717301 |
tcttagatgtttcatccttccaatactagatggaat |
7717336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University