View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5335_high_28 (Length: 244)
Name: NF5335_high_28
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 29953445 - 29953668
Alignment:
| Q |
4 |
ttgatgaggtgctggaagtgataataatagaacatgaagaaactaataatgtagacaaaactcatcatgaagactttgttgacatacttctttcatttat |
103 |
Q |
| |
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||||||||||| ||||||| || ||| ||| |||||| |||| | |||||||||||||| || ||||||||||||||||||||||||||| ||||||| |
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| T |
29953445 |
ttgatgaggtgttggaagttattttaacagagcatgaacaaaccactaatgtagacaaaaatcgccatgaagactttgttgacatacttcttacatttat |
29953544 |
T |
|
| Q |
104 |
gaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgataca |
203 |
Q |
| |
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| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
29953545 |
gcaccaaaccattgatctagaaaatgaagaaaatcatttcattgatcgaactaacatcaaggcaattttactagacttgactgtggcagcaattgataca |
29953644 |
T |
|
| Q |
204 |
tctgcgaccgcgattgaatgggct |
227 |
Q |
| |
|
||||| |||| ||||||||||||| |
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|
| T |
29953645 |
tctgctaccgtgattgaatgggct |
29953668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 29946481 - 29946706
Alignment:
| Q |
1 |
cacttgatgaggtgctggaagtgataataatagaacatgaagaaactaataatgtagacaaaactcatcatgaagactttgttgacatacttctttcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| |||| | |||||||||||||||||||||||||||||| || |||||||| || ||| | |
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|
| T |
29946481 |
cacttgatgaggtgctggaagtgataataacagagcatgaacaaacaactaatgtagacaaaactcatcatgaagacttcgtagacatactactctcaat |
29946580 |
T |
|
| Q |
101 |
tatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgat |
200 |
Q |
| |
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|| |||||||||||| |||| | |||||| | || ||||| ||||||||| | ||||| ||||| || |||||||||| | || ||||||||||||| |
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| T |
29946581 |
taagaaccaaaccatagatcaaaagaatgaacagaaacatgttattgatcgaccaaacattaaggc-atattactagacacggttatggcagcaattgaa |
29946679 |
T |
|
| Q |
201 |
acatctgcgaccgcgattgaatgggct |
227 |
Q |
| |
|
|||||||| |||||||||||||||||| |
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|
| T |
29946680 |
acatctgctaccgcgattgaatgggct |
29946706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 29995204 - 29995427
Alignment:
| Q |
4 |
ttgatgaggtgctggaagtgataataatagaacatgaagaaactaataatgtagacaaaactcatcatgaagactttgttgacatacttctttcatttat |
103 |
Q |
| |
|
|||||||| ||| || |||||| ||| |||||||||| || || ||||||| |||||||||||||| |||| ||||| ||||||||||||||| |||| |
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| T |
29995204 |
ttgatgagcagctagaggtgatattaacagaacatgaacaagctgctaatgtaaacaaaactcatcataaagattttgtagacatacttctttcaattat |
29995303 |
T |
|
| Q |
104 |
gaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgataca |
203 |
Q |
| |
|
| |||||||||||||| | | |||| |||||| |||||||||||||||||||||||||| ||||| || |||||| | ||||||||||| |||||| |
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|
| T |
29995304 |
gcaccaaaccattgatgtcgagggtgaacaaaatctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagtggcagcaatcgataca |
29995403 |
T |
|
| Q |
204 |
tctgcgaccgcgattgaatgggct |
227 |
Q |
| |
|
||||| ||| |||||||||||||| |
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|
| T |
29995404 |
tctgctacctcgattgaatgggct |
29995427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30044005 - 30043782
Alignment:
| Q |
1 |
cacttgatgaggtgctggaagtgataataatagaacatgaagaaactaataatgtagacaaaactcatcatgaagactttgttgacatacttctttcatt |
100 |
Q |
| |
|
|||||||||||||||| || |||||| ||| |||||||||| || || ||||||| |||||||||| | ||| ||||| ||||||||||||||| | |
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|
| T |
30044005 |
cacttgatgaggtgctagaggtgatattaacagaacatgaacaagctgctaatgtaaacaaaactcaaaa---agattttgtagacatacttctttcaat |
30043909 |
T |
|
| Q |
101 |
tatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgat |
200 |
Q |
| |
|
|||| |||||||||||||| | | |||| |||||| |||||||||||||||||||||||||| ||||| || |||||| | ||||||||||||||| |
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|
| T |
30043908 |
tatgcaccaaaccattgatattgagggtgaacaaaatctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagtggcagcaattgat |
30043809 |
T |
|
| Q |
201 |
acatctgcgaccgcgattgaatgggct |
227 |
Q |
| |
|
|||||||| ||| |||||||||||||| |
|
|
| T |
30043808 |
acatctgctacctcgattgaatgggct |
30043782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 29944509 - 29944735
Alignment:
| Q |
1 |
cacttgatgaggtgctggaagtgataataatagaacatgaagaaactaataatgtagacaaaactcatcatgaagactttgttgacatacttctttcatt |
100 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||| |||||| |||| | |||| ||||||||||| ||||||||||||||| ||||||||||| | || |
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|
| T |
29944509 |
cacttgatgaggtgttggagatgataatatcagagcatgaacaaaccactaatacagacaaaactcgtcatgaagactttgtagacatacttctcacttt |
29944608 |
T |
|
| Q |
101 |
tatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgat |
200 |
Q |
| |
|
|| | |||||| |||||||| || | |||| ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| || || | |
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|
| T |
29944609 |
taagcaccaaaacattgatcatgggagtgaacaaaatcatgtcattgatcgaactaacatcaaagctattttactagacatggttgtggcatcatttagt |
29944708 |
T |
|
| Q |
201 |
acatctgcgaccgcgattgaatgggct |
227 |
Q |
| |
|
|||||||| ||| | ||||| |||||| |
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|
| T |
29944709 |
acatctgctaccacaattgagtgggct |
29944735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 30007046 - 30007216
Alignment:
| Q |
57 |
gacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgatcgaacta |
156 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||||||||||||| ||||| |||||||||||||| | | |||| |||||| |||||||||||||||| |
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|
| T |
30007046 |
gacaaaactcgtaatgaagactttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaacaaaatctcgtcattgatcgaacta |
30007145 |
T |
|
| Q |
157 |
acatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggct |
227 |
Q |
| |
|
|||||||||| ||||| || |||||| | | |||| || || |||||||||| ||| ||||||| |||||| |
|
|
| T |
30007146 |
acatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattgagtgggct |
30007216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 218
Target Start/End: Complemental strand, 30068477 - 30068309
Alignment:
| Q |
50 |
taatgtagacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgat |
149 |
Q |
| |
|
||||||| |||||||||||||| |||| || || ||||||||||||||| ||||| | |||||||||||| | | |||| |||||| || |||||| |
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|
| T |
30068477 |
taatgtaaacaaaactcatcataaagatttcgtagacatacttctttcaattatgcatcaaaccattgatgtcgagggtgaacaaaatctcgtaattgat |
30068378 |
T |
|
| Q |
150 |
cgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgatt |
218 |
Q |
| |
|
||| |||||||||| || ||||| || |||||| | ||||||||||||||||||||||| ||| ||||| |
|
|
| T |
30068377 |
cgatctaacatcaaagctattttgctcgacatgatagtggcagcaattgatacatctgctacctcgatt |
30068309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 29964710 - 29964912
Alignment:
| Q |
1 |
cacttgatgaggtgctggaagtgataataatagaacatgaagaaactaataatgtagacaaaactcatcatgaagactttgttgacatacttctttcatt |
100 |
Q |
| |
|
||||||||||||| |||| ||||||| | ||| |||||| ||| | ||||||||||||| || ||||||||| || |||| |||||||| ||| | |
|
|
| T |
29964710 |
cacttgatgaggtattggagatgataattacagagcatgaacaaagcactaatgtagacaaagttcgtcatgaagatttcattgatatacttctctcaat |
29964809 |
T |
|
| Q |
101 |
tatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgat |
200 |
Q |
| |
|
| || ||||||| | |||| || ||||||| ||| | ||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
29964810 |
tgtgcaccaaacggtagatccagaaaatgaacaaagtggtgttattgacagaactaacatcaaggcaattttactagacatgattgtggcaggaattgat |
29964909 |
T |
|
| Q |
201 |
aca |
203 |
Q |
| |
|
||| |
|
|
| T |
29964910 |
aca |
29964912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 30010088 - 30009886
Alignment:
| Q |
1 |
cacttgatgaggtgctggaagtgataataatagaacatgaagaaactaataatgtagacaaaactcatcatgaagactttgttgacatacttctttcatt |
100 |
Q |
| |
|
||||||||||||| |||| ||||||| | ||| |||||| ||| | ||||||||||||| || ||||||||| || |||| |||||||| ||| | |
|
|
| T |
30010088 |
cacttgatgaggtattggagatgataattacagagcatgaacaaagcactaatgtagacaaagttcgtcatgaagatttcattgatatacttctctcaat |
30009989 |
T |
|
| Q |
101 |
tatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgat |
200 |
Q |
| |
|
| || ||||||| | |||| || ||||||| ||| | ||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
30009988 |
tgtgcaccaaacggtagatccagaaaatgaacaaagtggtgttattgacagaactaacatcaaggcaattttactagacatgattgtggcaggaattgat |
30009889 |
T |
|
| Q |
201 |
aca |
203 |
Q |
| |
|
||| |
|
|
| T |
30009888 |
aca |
30009886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 30001014 - 30001079
Alignment:
| Q |
141 |
gtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatct |
206 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||| || |||||| | | |||| |||||||||||||| |
|
|
| T |
30001014 |
gtcattgatcgaacgatcatcaaggctattttgctcgacatgataggggcatcaattgatacatct |
30001079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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