View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5335_high_35 (Length: 231)
Name: NF5335_high_35
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_high_35 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 22037325 - 22037094
Alignment:
| Q |
1 |
agaaaataaccaagaatgaataatatcgcaagtgcattgataaaatctacaaagaagtaggtacatagaacaatactattgtatttgaatgtttttt-gc |
99 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22037325 |
agaaaataaccaagaatgaataatatcacaagtgcattgataaaatctacaaagaagtaggtacatagaacaatactattgtatttgaatgtttttttgt |
22037226 |
T |
|
| Q |
100 |
atttacaggtgttgtctatacatctcagattgttcatttcaaatttccactattccctttgcatcgtaatttcttcaccgggtaaacatatgtgtgtctt |
199 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
22037225 |
gtttacgggtgttgtttatacatctcagattgttcatttcaaatttccactattccctttgcatcataatttcttcgccgggtaaacatatgtgtgtctt |
22037126 |
T |
|
| Q |
200 |
cttcaagtttataatatgactttggtcaacat |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
22037125 |
cttcaagtttataatatgactttggtcaacat |
22037094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 22046652 - 22046568
Alignment:
| Q |
1 |
agaaaataaccaagaatgaataatatcgcaagtgcattgataaaatctacaaagaagtaggtacatagaacaatactattgtatt |
85 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22046652 |
agaaaataaccaagaatgaataatatcacaagtgcattgataaaatctacaaagaagtaggtacatagaacaatactattgtatt |
22046568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 44310534 - 44310432
Alignment:
| Q |
127 |
gattgttcatttcaaatttccactattccctttgcatcgtaatttcttcaccgggtaaacatatgtgtgtcttcttcaagtttataatatgactttggtc |
226 |
Q |
| |
|
||||||| |||||||| || || | || | |||||||| ||| |||||||| ||||||| ||||||||||| |||||||||||||| |||||||| ||| |
|
|
| T |
44310534 |
gattgtttatttcaaactttcattgtttcatttgcatcataagttcttcactgggtaaagatatgtgtgtcagcttcaagtttataagatgactttcgtc |
44310435 |
T |
|
| Q |
227 |
aac |
229 |
Q |
| |
|
||| |
|
|
| T |
44310434 |
aac |
44310432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 44310647 - 44310588
Alignment:
| Q |
38 |
tgataaaatctacaaagaagtaggtacatagaacaatactattgtatttgaatgtttttt |
97 |
Q |
| |
|
||||| ||||||||||||| || |||||| ||||||||||| |||||||||||||||| |
|
|
| T |
44310647 |
tgatacaatctacaaagaaataagtacattgaacaatactacaatatttgaatgtttttt |
44310588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University