View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_high_4 (Length: 454)
Name: NF5335_high_4
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 61 - 436
Target Start/End: Complemental strand, 43217404 - 43217021
Alignment:
| Q |
61 |
ggacttaaagcaaaaagtgtttattttaccggagactaaatacttatttaaacctaaaaatattattgagcatatnnnnnnnngttacatgaggaatgtg |
160 |
Q |
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| T |
43217404 |
ggacttaaagcaaaaggtgtttattttaccggagactaaatacttatttaaac-taaaaatattattgagcatataaaaaagagttacatgaggaatgtg |
43217306 |
T |
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| Q |
161 |
tctagattttgagggattggattgaggaggaggag---------aaagagtatttttagggtttgagggtttgttgcggaaagccaatattcgcgttggg |
251 |
Q |
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| T |
43217305 |
tctagattttgagggattggattgaggaggaggaggaggaggagaaagagtatttttagggtttgagggtttgttgcggaaagccaatattcgcgttggg |
43217206 |
T |
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| Q |
252 |
aggtcggcggcttccgagagttttttctggtagagttcactccatgctgacgatgaatcattctgttttcccaatgtagcattcttcgttgttagcatat |
351 |
Q |
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|||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43217205 |
aggttggcggcttccaagagtattttctggtagagttcactccatgctgacgatgaatcattctgttttcccaatgtagcattcttcgttgttagcatat |
43217106 |
T |
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| Q |
352 |
attgagcataaccgaaatacatggctgatctatttggtataaacctgtcatagttattatctgaatagtgtttgaatcccattag |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43217105 |
attgagcataaccgaaatacatggctgatctatttggtataaacctgtcatagttattatctgaatagtgtttgaatcccattag |
43217021 |
T |
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