View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_high_9 (Length: 374)
Name: NF5335_high_9
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 3 - 194
Target Start/End: Complemental strand, 34933371 - 34933180
Alignment:
| Q |
3 |
tgaaaacaatgaaaaacacatacaaaaaagaactggagagttttgaatattctcttgtgtaaatggcacattttcattcatcaatagagaggctctggct |
102 |
Q |
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| T |
34933371 |
tgaaaacaatgaaaaacacttacaaaaaagaacaggagaggtttgaatattctctcgtgtaaagggcacatgttcattcataaatagagaggctcaggct |
34933272 |
T |
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| Q |
103 |
tgggcttgaaaatatcattcagcccaaatatctaactctttcggttatacacacacacttcttcttctagggttgcaggtatgtatgtaagt |
194 |
Q |
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| T |
34933271 |
tgggcttgaaaatatcattcagcccaaataactaactctttcggttatacacacacacttgttcttctagggttgcaggtatgtatgtaagt |
34933180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 276 - 358
Target Start/End: Complemental strand, 34933098 - 34933016
Alignment:
| Q |
276 |
gggggttagggtttaaaccttatgaattcgggattttctcttctttgatggaatgattatattagttttgatagagtgtgttt |
358 |
Q |
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| T |
34933098 |
gggggttagggtttaaaccttgtgaattcgggattttctcttctttgatggaatgattatattagttttgatagagtgtgttt |
34933016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 34926816 - 34926734
Alignment:
| Q |
99 |
ggcttgggcttgaaaatatcattcagcccaaatatctaactctttcggttatacacac--acacttcttcttctagggttgca |
179 |
Q |
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| T |
34926816 |
ggcttgggtttggaaatatcattcagcccaaataactaactctttcggttatacacacacacacttgttcttctcgggttgca |
34926734 |
T |
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