View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_low_1 (Length: 559)
Name: NF5335_low_1
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 40 - 542
Target Start/End: Original strand, 38137043 - 38137549
Alignment:
| Q |
40 |
taaataaatctcaatttcctagatgattaatctacatggttccacatagggatatattggttataaagaaaaagtaagtaagtcttcatataattctgct |
139 |
Q |
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| T |
38137043 |
taaatgaatctcaatttcctagatgattaatctacatagttccacatagggatatattggttataaagaaaaagtaagtaagtcttcatataattctgct |
38137142 |
T |
|
| Q |
140 |
tgagtttgtagcaaaaaagattcacgagattgactaattagtggattttaaagtggtggacgaagcccttggggaaaagttggtggagacatgaattaca |
239 |
Q |
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| T |
38137143 |
tgagtttgtagcaaaaaagattcacgagattgactaattagtggattttaaagtggtggacgaagcccttggggaaaagttggtggagacatgaattaca |
38137242 |
T |
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| Q |
240 |
gaaactagtgtattagatagatgggtcaacaatgcttgtgtaacaagttaggtgcgtgatttgagctgaaaatttagacactataaagctatatggtgtt |
339 |
Q |
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| T |
38137243 |
gaaactagtgtattagatagatgggtcaacaatgcttgtgtaacaagttaggtgcgtgatttgagctgaaaatttagacactataaagctatatggtgtt |
38137342 |
T |
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| Q |
340 |
ctatattactgtataattgatttcattggagtaaccaaaataaattaagatatgaaatattgttttttgaacaaat------atatgaaactgaatttta |
433 |
Q |
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| T |
38137343 |
ctatattactgtataattgatttcattggagtaaccaaaataaattaagatatgaaatattgttttttgaacaaatattaagatatgaaactgaatttta |
38137442 |
T |
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| Q |
434 |
acttaaaataagaatgtggaactttcgactctaaaatctatatatgagtgtatttaaatataaattacactacatttaaatcattttaaataattttacg |
533 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38137443 |
acttaaaataagaatgtggaactttcgactctaaaatc--tatatgagtgtatttaaatataaattacactacatttaaatcattttaaataattttacg |
38137540 |
T |
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| Q |
534 |
gcaaaaaca |
542 |
Q |
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| T |
38137541 |
gcaaaaaca |
38137549 |
T |
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