View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_low_11 (Length: 361)
Name: NF5335_low_11
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 34933339 - 34933655
Alignment:
| Q |
1 |
gttcttttttgtaagtgtttttcattgttttcatgccttcattacttgaaatcattccatgagggaacaacagaaagagacatatatgataatcaacttg |
100 |
Q |
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| T |
34933339 |
gttcttttttgtaagtgtttttcattgttttcaagccttcattacttgaaatcattccatgagagaacaacagaaagagacatatatgataatcaacttg |
34933438 |
T |
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| Q |
101 |
agttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgaatgaagcaacgattatgaaaatatgattgaaagagatacaaacgaaaact |
200 |
Q |
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| T |
34933439 |
agttttgacaaaataaagaagaagaatgaaaatacatagataccttgcgagtgaagcaacgattatgaaaatatgattgaaagagatacaaacgaaaact |
34933538 |
T |
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| Q |
201 |
gtcatgcaatgcaaccctagagagacaaattcaacaaattcttctcattctacttataagaagcttcaacccaagagattacgaacgaaaactgtcatgc |
300 |
Q |
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| T |
34933539 |
gtcatgcaatgcaaccctagagag---------acaaattcttctcattctacttataagaagcttcaaccctagagattacgaacgaaaactatcatgc |
34933629 |
T |
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| Q |
301 |
aatgaaaatacatagataccttggag |
326 |
Q |
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| T |
34933630 |
aatgaaaatacatagatacgttggag |
34933655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 134 - 322
Target Start/End: Original strand, 34926958 - 34927146
Alignment:
| Q |
134 |
acatagataccttgcgaatgaagcaacgattatgaaaatatgattgaaagagatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattca |
233 |
Q |
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| T |
34926958 |
acatagataccttgagagtgaagcaacgaatatgaaaataagattgaaagagataagaacgaaaactgtcatgcaatgcaaccctagagagacaagttca |
34927057 |
T |
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| Q |
234 |
acaaattcttctcattctacttataagaagcttcaacccaagagattacgaacgaaaactgtcatgcaatgaaaatacatagatacctt |
322 |
Q |
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| T |
34927058 |
acaaattcttctcattctacgtataagaagcttcaaccctagagattacgaaaaaaaactgtcatgcaatgaaattacatagatacctt |
34927146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 34926853 - 34926885
Alignment:
| Q |
6 |
tttttgtaagtgtttttcattgttttcatgcct |
38 |
Q |
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| T |
34926853 |
tttttgtaagtgtttttcattgttttcatgcct |
34926885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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