View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5335_low_12 (Length: 355)

Name: NF5335_low_12
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5335_low_12
NF5335_low_12
[»] chr7 (5 HSPs)
chr7 (122-345)||(18022068-18022289)
chr7 (292-347)||(18012555-18012610)
chr7 (15-53)||(18022705-18022743)
chr7 (141-179)||(10282828-10282866)
chr7 (142-179)||(37986145-37986182)
[»] chr8 (3 HSPs)
chr8 (142-188)||(18969458-18969504)
chr8 (142-188)||(18947035-18947081)
chr8 (144-178)||(30886505-30886539)
[»] chr2 (2 HSPs)
chr2 (142-185)||(559413-559456)
chr2 (142-179)||(15458852-15458889)
[»] scaffold0013 (1 HSPs)
scaffold0013 (142-179)||(42303-42340)
[»] chr6 (1 HSPs)
chr6 (142-179)||(26277594-26277631)
[»] chr4 (3 HSPs)
chr4 (142-179)||(39476323-39476360)
chr4 (144-188)||(10117971-10118015)
chr4 (152-188)||(37813204-37813240)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 122 - 345
Target Start/End: Complemental strand, 18022289 - 18022068
Alignment:
Q  122 agaagttacttgttttctactaaaatctcttaaaaataatctctaaattattgaatgtaaaattcataannnnnnnnataaacaatggacataaaatatt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  18022289 agaagttacttgttttctactaaaatctcttaaaaataatctctaaattattgaatgtaaaattcataatttttt--ataaacaatggacataaaatatt 18022192  T
Q  222 tgcatcaacctagtccttaattattattcttaccatattgctattgctaacatatctaccttatttttgaacaaactagtggtttaaattataccctaag 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18022191 tgcatcaacctagtccttaattattattcttaccatattgctattgctaacatatctaccttatttttgaacaaactagtggtttaaattataccctgag 18022092  T
Q  322 tttcttgccaacccattattcatt 345  Q
    ||||||||||||||||||||||||    
T  18022091 tttcttgccaacccattattcatt 18022068  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 18012610 - 18012555
Alignment:
Q  292 acaaactagtggtttaaattataccctaagtttcttgccaacccattattcatttc 347  Q
    ||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||    
T  18012610 acaaactagtggtttgaattatatcctgagttccttgccaacccattattcatttc 18012555  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 18022743 - 18022705
Alignment:
Q  15 attttgaataactttgctggaaaataatatttgattata 53  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18022743 attttgaataactttgctggaaaataatatttgattata 18022705  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 10282828 - 10282866
Alignment:
Q  141 ctaaaatctcttaaaaataatctctaaattattgaatgt 179  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  10282828 ctaaaatctctaaaaaataatctctaaattattcaatgt 10282866  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 37986145 - 37986182
Alignment:
Q  142 taaaatctcttaaaaataatctctaaattattgaatgt 179  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  37986145 taaaatctctaaaaaataatctctaaattattcaatgt 37986182  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 18969504 - 18969458
Alignment:
Q  142 taaaatctcttaaaaataatctctaaattattgaatgtaaaattcat 188  Q
    |||||||||| ||||||||||||||||||||||||||| ||| ||||    
T  18969504 taaaatctctaaaaaataatctctaaattattgaatgtcaaaatcat 18969458  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 18947035 - 18947081
Alignment:
Q  142 taaaatctcttaaaaataatctctaaattattgaatgtaaaattcat 188  Q
    |||||||||| |||||||| |||||||||||||||||| ||| ||||    
T  18947035 taaaatctctaaaaaataacctctaaattattgaatgtcaaaatcat 18947081  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 30886539 - 30886505
Alignment:
Q  144 aaatctcttaaaaataatctctaaattattgaatg 178  Q
    |||||||||||||||||||| ||||||||||||||    
T  30886539 aaatctcttaaaaataatctttaaattattgaatg 30886505  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 559456 - 559413
Alignment:
Q  142 taaaatctcttaaaaataatctctaaattattgaatgtaaaatt 185  Q
    |||| ||||| ||||||||||||||||||||||||||| |||||    
T  559456 taaagtctctaaaaaataatctctaaattattgaatgtcaaatt 559413  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 15458889 - 15458852
Alignment:
Q  142 taaaatctcttaaaaataatctctaaattattgaatgt 179  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  15458889 taaaatctctaaaaaataatctctaaattatttaatgt 15458852  T

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Target: scaffold0013 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 42303 - 42340
Alignment:
Q  142 taaaatctcttaaaaataatctctaaattattgaatgt 179  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  42303 taaaatctcttaaagatagtctctaaattattgaatgt 42340  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 26277594 - 26277631
Alignment:
Q  142 taaaatctcttaaaaataatctctaaattattgaatgt 179  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  26277594 taaaatctctaaaaaataatctttaaattattgaatgt 26277631  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 39476360 - 39476323
Alignment:
Q  142 taaaatctcttaaaaataatctctaaattattgaatgt 179  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  39476360 taaaatctctaaaaaataatctctaaattattcaatgt 39476323  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 10118015 - 10117971
Alignment:
Q  144 aaatctcttaaaaataatctctaaattattgaatgtaaaattcat 188  Q
    |||||||| ||||||||||||| ||||||||||||| ||| ||||    
T  10118015 aaatctctaaaaaataatctctgaattattgaatgtcaaaatcat 10117971  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 37813204 - 37813240
Alignment:
Q  152 taaaaataatctctaaattattgaatgtaaaattcat 188  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  37813204 taaaaataatctctaaattattgaatgtcaaaatcat 37813240  T

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