View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_low_13 (Length: 343)
Name: NF5335_low_13
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 32210715 - 32211040
Alignment:
| Q |
1 |
ctttattatagtttgaaccaagatcatggctatgtagtttgtttatgtgtttcctaattctgttgcacatatatattaagaaaataggggtg---ttcaa |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32210715 |
ctttattatagtttgaaccaagatcatggctatgtagtttgtttatgtttttcctaattctgttgcacatatatattaagaaaataggggtgaacttcaa |
32210814 |
T |
|
| Q |
98 |
tcctgtttcctttctagtattttgttctctttttggcttcatgaaattttgttcctagttttgtgaaaagtcgctctagacttctagtatcagttatcat |
197 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32210815 |
tcctgtttcctttctagtattttgttctctttt-ggcttcatgaaattttgttcctagttttgtgaaaagtcgctctagacttctagtatcagttatcat |
32210913 |
T |
|
| Q |
198 |
gtttatgtttatgactaatggtttcctcctagttggaagttgtaaacttggaattnnnnnnnnnnnntaagtttgtgataatgatatgttcgtggtttac |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
32210914 |
gtttatgtttatgactaatggtttcctcctagttggaagttgtaaacttggaattgagagagagagataagtttgtgataatgatatgttcgtcgtttac |
32211013 |
T |
|
| Q |
298 |
ttctaccacatcaaaatcacgatgacc |
324 |
Q |
| |
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|||| ||| |||||||||||||||||| |
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| T |
32211014 |
ttctgccagatcaaaatcacgatgacc |
32211040 |
T |
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