View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5335_low_18 (Length: 306)

Name: NF5335_low_18
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5335_low_18
NF5335_low_18
[»] chr7 (5 HSPs)
chr7 (201-287)||(25945017-25945103)
chr7 (84-148)||(25944900-25944964)
chr7 (92-141)||(25950762-25950811)
chr7 (244-287)||(25951188-25951231)
chr7 (12-71)||(25944827-25944882)


Alignment Details
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 25945017 - 25945103
Alignment:
Q  201 cactacgcaaccctacttaagcttgagctaccgtcgctcttcacggtgcgtttcctttctcactcttccatatcgccgtacgctttc 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  25945017 cactacgcaaccctacttaagcttgagctaccgtcgctcttcacggtgcgtttcctttctaacttttccatatcgccgtacgctttc 25945103  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 25944900 - 25944964
Alignment:
Q  84 ggtatatcaattgtttgttacactaaaaagataatgagtttaaaaaattaagattttatccgtgg 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25944900 ggtatatcaattgtttgttacactaaaaagataatgagtttaaaaaattaagattttatccgtgg 25944964  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 25950762 - 25950811
Alignment:
Q  92 aattgtttgttacactaaaaagataatgagtttaaaaaattaagatttta 141  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  25950762 aattgtttgttatactaaaaagataatgagtttaaaaaattaagaattta 25950811  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 287
Target Start/End: Original strand, 25951188 - 25951231
Alignment:
Q  244 cggtgcgtttcctttctcactcttccatatcgccgtacgctttc 287  Q
    ||||||||||||||||||||| |||||||||||||||| |||||    
T  25951188 cggtgcgtttcctttctcacttttccatatcgccgtacactttc 25951231  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 25944827 - 25944882
Alignment:
Q  12 agagatagagtgcgagcaaaaaacaaaagagtttgtcagaagaagagagtatatcaattg 71  Q
    |||||||||||||||| |||| ||||||||||||||    ||||||||||||||||||||    
T  25944827 agagatagagtgcgaggaaaa-acaaaagagtttgt---tagaagagagtatatcaattg 25944882  T

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