View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_low_2 (Length: 557)
Name: NF5335_low_2
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Original strand, 39662863 - 39663400
Alignment:
| Q |
1 |
gagctaataatttgagcagaaaattctaaccttacctgagaaacaaaccatatcaacaaccatatataaaagagtcttgttttatgctatatatgtgaca |
100 |
Q |
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| T |
39662863 |
gagctaataatttgagcagaaaattctaaccttacctgagaaacaaaccatatcaacaaccata----aaagagacttgttttatgctatatatgtgaca |
39662958 |
T |
|
| Q |
101 |
gaaactatgagaaggagcagaaaaccttaccaaaaccaaaccagaagaagaaaatgatgctacatatgaaggagaaattaggaaaatgaagtatagctag |
200 |
Q |
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| T |
39662959 |
gaaactatgagaaggagcagaaaaccttaccaaaaccaaaccagaagaagaaaatgatgctacatatgaaggagaaattaggaaaatgaagtatagctag |
39663058 |
T |
|
| Q |
201 |
caaaagtttgctggggggaatgaagcctggtccgagattgaaagttagtgatgagtgagtagagagtactcttccatctccatcacctcgagccagacaa |
300 |
Q |
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| T |
39663059 |
caaaagtttgctggggggaatgaagcctggtccgagattgaaagttagtgatgagtgagtagagagtactcttccatctccatcacctcgagccagacaa |
39663158 |
T |
|
| Q |
301 |
cgttcctctcaacctaactcttgcttctctttgatctttacaaatctaaataggtagatatatagagatgatttcatatataataaggatacactcacaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39663159 |
cgttcctctcaacctaactcttgcttctctttgatctttacaaatctaaataggtagatatatagagatgatttcatatataataaggataaactcacaa |
39663258 |
T |
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| Q |
401 |
gaagaaacaattaagattttgaggggaatgaagcctggtccgaagccttatagttcatacaattaagactgaacttcctttgtgaaactgaaaagcctcg |
500 |
Q |
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| T |
39663259 |
gaagaaacaattaagattttgaggggaatgaagcctggtccgaagccttatagttcatacaattaagactgaacttcctttgtgaaactgaaaagcctcg |
39663358 |
T |
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| Q |
501 |
agccagccaacattcccctcaaataagaagacagacaccttc |
542 |
Q |
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| T |
39663359 |
agccagccaacattcccctcaaataagaagacagacaccttc |
39663400 |
T |
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