View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5335_low_20 (Length: 257)

Name: NF5335_low_20
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5335_low_20
NF5335_low_20
[»] chr7 (17 HSPs)
chr7 (1-250)||(43029838-43030086)
chr7 (99-250)||(42800851-42801002)
chr7 (99-250)||(42835523-42835671)
chr7 (99-190)||(35070415-35070506)
chr7 (99-190)||(35096451-35096542)
chr7 (99-179)||(35079113-35079193)
chr7 (99-191)||(35093203-35093295)
chr7 (100-192)||(33864546-33864638)
chr7 (104-192)||(34150969-34151057)
chr7 (104-192)||(34176067-34176155)
chr7 (99-165)||(36741465-36741531)
chr7 (99-184)||(38288226-38288311)
chr7 (103-187)||(45582145-45582229)
chr7 (107-152)||(38155331-38155376)
chr7 (101-161)||(38283759-38283819)
chr7 (122-182)||(44958707-44958767)
chr7 (107-223)||(38185566-38185682)
[»] chr5 (1 HSPs)
chr5 (99-191)||(9666623-9666715)
[»] chr6 (6 HSPs)
chr6 (100-192)||(25570603-25570695)
chr6 (100-192)||(26005071-26005163)
chr6 (99-161)||(4161461-4161523)
chr6 (103-161)||(4223085-4223143)
chr6 (143-192)||(26105095-26105144)
chr6 (100-141)||(26123895-26123936)
[»] scaffold0176 (1 HSPs)
scaffold0176 (100-155)||(20474-20529)
[»] chr4 (1 HSPs)
chr4 (5-56)||(46528392-46528443)
[»] chr1 (1 HSPs)
chr1 (99-161)||(52214741-52214803)
[»] chr3 (1 HSPs)
chr3 (101-161)||(2220578-2220638)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 43030086 - 43029838
Alignment:
Q  1 aaacttttgcattacaaaaagttgtgaatttaacatattggacatttgaggtaacgannnnnnnctcttttccttccattaccaaaaatggatttatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  43030086 aaacttttgcattacaaaaagttgtgaatttaacatattggacatttgaggtaacgatttttt-ctcttttccttccattaccaaaaatggatttatgaa 43029988  T
Q  101 cactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccacagtaattaa 200  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43029987 cactataaaattataagctgtcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccacagtaattaa 43029888  T
Q  201 tccaactatgagcacctatatagtatctgtcacgatcattagtgtctctg 250  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  43029887 tccatctacgagcacctatatagtatctgtcacgatcattagtgtctctg 43029838  T

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Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 99 - 250
Target Start/End: Complemental strand, 42801002 - 42800851
Alignment:
Q  99 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccacagtaatt 198  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| ||||    
T  42801002 aacattacaaaattataaggtggcattgttcatttacttcatctttaagcatctcgtgaataacattctcttcaatccaacaaccaccaccgcagaaatt 42800903  T
Q  199 aatccaactatgagcacctatatagtatctgtcacgatcattagtgtctctg 250  Q
    |||||| |||  |||| ||||||||||||||||||||||| |||| ||||||    
T  42800902 aatccatctactagcatctatatagtatctgtcacgatcagtagtatctctg 42800851  T

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Target: chr7; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 99 - 250
Target Start/End: Complemental strand, 42835671 - 42835523
Alignment:
Q  99 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccacagtaatt 198  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||  |||||||||||||||||| ||||    
T  42835671 aacactacaaaattataaggtggcattgttcatttacttcatctttaagcatctcgtgaat---attctctccaatgcaacaaccaccaccacagaaatt 42835575  T
Q  199 aatccaactatgagcacctatatagtatctgtcacgatcattagtgtctctg 250  Q
    |||||| |||  |||| ||||||||||||||||||||||| |||||||||||    
T  42835574 aatccatctactagcatctatatagtatctgtcacgatcagtagtgtctctg 42835523  T

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Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 35070415 - 35070506
Alignment:
Q  99 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccacca 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  35070415 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacgacaaccacca 35070506  T

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Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 35096451 - 35096542
Alignment:
Q  99 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccacca 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||    
T  35096451 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctcttcaaaccaacgacaaccacca 35096542  T

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Target: chr7; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 35079113 - 35079193
Alignment:
Q  99 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaac 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35079113 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcatgaataacattctctccaaaccaac 35079193  T

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Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 35093203 - 35093295
Alignment:
Q  99 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccac 191  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || ||||||||    
T  35093203 aacactacaaaattataagctgacattgttcatttacttcatctataagcatctcatgaataacattctctccaaaccaacgacaaccaccac 35093295  T

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Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 33864638 - 33864546
Alignment:
Q  100 acactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccaca 192  Q
    |||||||| ||| |||||||| |||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||| ||||||||||    
T  33864638 acactacagaataataagctgacattgttcatttacttcatccttaagcatctcgcgaataacattctttcctaaccaacaatcaccaccaca 33864546  T

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Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 34151057 - 34150969
Alignment:
Q  104 tacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccaca 192  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||  |||||||||    
T  34151057 tacaaaattataagctgacattgttcatttacttcatctttaagcatctcgtaaataacattatttcctaaccaacaatgaccaccaca 34150969  T

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Target: chr7; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 34176067 - 34176155
Alignment:
Q  104 tacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccaca 192  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||  |||||||||    
T  34176067 tacaaaattataagctgacattgttcatttacttcatctttaagcatctcgtaaataacattatttcctaaccaacaatgaccaccaca 34176155  T

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Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 36741465 - 36741531
Alignment:
Q  99 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacatt 165  Q
    ||||||||||||||||||| || ||||||| |||||||||||||||||||||||| | |||||||||    
T  36741465 aacactacaaaattataagttgacattgtttatttacttcatctttaagcatctcataaataacatt 36741531  T

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Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 38288311 - 38288226
Alignment:
Q  99 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaacca 184  Q
    ||||||||| ||||||||  || || |||||||||||||||||||||||||| || ||||||| ||||| | ||||||||||||||    
T  38288311 aacactacagaattataaattgacaatgttcatttacttcatctttaagcatttcttgaataagattctgttcaaaccaacaacca 38288226  T

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Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 45582229 - 45582145
Alignment:
Q  103 ctacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccacca 187  Q
    ||||||||||||||| || ||| ||||||||||||| ||||| |||||||| ||||||||||| |   |||||||||||| ||||    
T  45582229 ctacaaaattataagttgacatggttcatttacttcgtctttgagcatctcctgaataacattttgcacaaaccaacaacaacca 45582145  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 38155331 - 38155376
Alignment:
Q  107 aaaattataagctggcattgttcatttacttcatctttaagcatct 152  Q
    ||||||||||| || |||||||||| ||||||||||||||||||||    
T  38155331 aaaattataagttgacattgttcatgtacttcatctttaagcatct 38155376  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 38283759 - 38283819
Alignment:
Q  101 cactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataa 161  Q
    |||||||||| || |||||| ||||||||||| |||||||||| |||||| || |||||||    
T  38283759 cactacaaaactacaagctgacattgttcattaacttcatcttgaagcatgtcatgaataa 38283819  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 44958767 - 44958707
Alignment:
Q  122 cattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaac 182  Q
    ||||||| |||||||| ||||||||||||||| ||||||||||| |   ||||||||||||    
T  44958767 cattgttgatttactttatctttaagcatctcttgaataacattatactcaaaccaacaac 44958707  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 38185566 - 38185682
Alignment:
Q  107 aaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccacagtaattaatccaac 206  Q
    ||||||||||| || ||||| | |  ||||||||||||||||||||  |||||| |||||  | |||||||||||| | || |  ||| |||| |||| |    
T  38185566 aaaattataagttgacattggtgaagtacttcatctttaagcatcttatgaatatcattccattcaaaccaacaacaatcatctgagtcattagtccatc 38185665  T
Q  207 tatgagcacctatatag 223  Q
    ||| ||||||| |||||    
T  38185666 tatcagcacctgtatag 38185682  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 9666715 - 9666623
Alignment:
Q  99 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccac 191  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| || ||||||||    
T  9666715 aacactacaaaattataagttggcattgttcatttacttcatctttaaacatctcatgaataacattctctccaaaccaacgacaaccaccac 9666623  T

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Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 25570695 - 25570603
Alignment:
Q  100 acactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccaca 192  Q
    |||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||    
T  25570695 acactacagaattataagctgacattgttcatttacttcatccttaagcatctcgtgaataacattctttcctaaccaacaatcaccaccaca 25570603  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 26005163 - 26005071
Alignment:
Q  100 acactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccaca 192  Q
    |||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||    
T  26005163 acactacagaattataagctgacattgttcatttacttcatccttaagcatctcgtgaataacattctttcctaaccaacaatcaccaccaca 26005071  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 4161461 - 4161523
Alignment:
Q  99 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataa 161  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||    
T  4161461 aacactacaaaattataagttggcattgttcatctacttcatctttaagcacctcatgaataa 4161523  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 4223085 - 4223143
Alignment:
Q  103 ctacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataa 161  Q
    ||||||||||||||| ||||||||||||| |||||||||| |||||| ||| |||||||    
T  4223085 ctacaaaattataagttggcattgttcatctacttcatctgtaagcacctcatgaataa 4223143  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 26105144 - 26105095
Alignment:
Q  143 ttaagcatctcgtgaataacattctctccaaaccaacaaccaccaccaca 192  Q
    |||| |||||||||||||||||||| ||| ||||||||| ||||||||||    
T  26105144 ttaaacatctcgtgaataacattctttcctaaccaacaatcaccaccaca 26105095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 26123936 - 26123895
Alignment:
Q  100 acactacaaaattataagctggcattgttcatttacttcatc 141  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  26123936 acactacagaattataagctgacattgttcatttacttcatc 26123895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 20474 - 20529
Alignment:
Q  100 acactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgt 155  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  20474 acactacaaaattataagctgacattgttcatttacttcatccttaagcatctcgt 20529  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 46528392 - 46528443
Alignment:
Q  5 ttttgcattacaaaaagttgtgaatttaacatattggacatttgaggtaacg 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46528392 ttttgcattacaaaaagttgtgaatttaacacattggacatttgaggtaacg 46528443  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 52214741 - 52214803
Alignment:
Q  99 aacactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataa 161  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||| |||||||    
T  52214741 aacactacaaaattataagttgggattgttcatctacttcatctttaagcacctcatgaataa 52214803  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 2220578 - 2220638
Alignment:
Q  101 cactacaaaattataagctggcattgttcatttacttcatctttaagcatctcgtgaataa 161  Q
    ||||| |||| ||||||||| ||||||||||| |||||||||| |||||| || |||||||    
T  2220578 cactaaaaaactataagctgacattgttcattaacttcatcttgaagcatgtcatgaataa 2220638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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