View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5335_low_23 (Length: 249)

Name: NF5335_low_23
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5335_low_23
NF5335_low_23
[»] chr3 (20 HSPs)
chr3 (1-236)||(22630714-22630949)
chr3 (5-233)||(22468226-22468454)
chr3 (43-237)||(22368186-22368380)
chr3 (9-236)||(22358277-22358504)
chr3 (5-236)||(22443014-22443245)
chr3 (5-172)||(22632204-22632371)
chr3 (5-228)||(22431435-22431657)
chr3 (9-228)||(22635786-22636005)
chr3 (82-236)||(22354086-22354242)
chr3 (8-236)||(22436909-22437137)
chr3 (7-236)||(22458764-22458993)
chr3 (7-236)||(22481745-22481974)
chr3 (10-202)||(21937118-21937310)
chr3 (70-236)||(22615534-22615700)
chr3 (48-151)||(21930424-21930527)
chr3 (48-151)||(22034520-22034623)
chr3 (48-151)||(22052736-22052839)
chr3 (103-236)||(21945682-21945815)
chr3 (10-151)||(22027965-22028106)
chr3 (10-151)||(22186953-22187094)
[»] chr4 (1 HSPs)
chr4 (5-95)||(29610973-29611062)
[»] chr8 (1 HSPs)
chr8 (103-151)||(27294606-27294654)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 22630949 - 22630714
Alignment:
Q  1 tatttggatgaagctgatgttgtgggctttgacgagccacgcgacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22630949 tatttggatgaagctgatgttgtgggctttgacgagccacgagacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattg 22630850  T
Q  101 ttggaatgggaggactggggaaaaccactttagccaagaaagtttttgacaacccaaaggtcgttaaacactttaattctcatgtatggatcacggtgtc 200  Q
    ||||||||||||||||||||||||||||| | ||||||||| |||||||||||| ||||||||||||||||||| ||| ||||| |||||||||||||||    
T  22630849 ttggaatgggaggactggggaaaaccactcttgccaagaaaatttttgacaaccgaaaggtcgttaaacactttgattgtcatgaatggatcacggtgtc 22630750  T
Q  201 tcgaccatacaatatagaaaaattgttgagggacat 236  Q
    |||||||||||||||||||| |||||||||||||||    
T  22630749 tcgaccatacaatatagaaacattgttgagggacat 22630714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 22468454 - 22468226
Alignment:
Q  5 tggatgaagctgatgttgtgggctttgacgagccacgcgacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttgg 104  Q
    |||||||||||||| ||||||| ||||| |||||||| |||||||||||||||| | || |||||||||||||||| ||||| |||||||| || |||||    
T  22468454 tggatgaagctgatcttgtgggatttgaagagccacgagacaaattgattgatttgttggtagagggaagagcagagcgcaccgttgtctccatagttgg 22468355  T
Q  105 aatgggaggactggggaaaaccactttagccaagaaagtttttgacaacccaaaggtcgttaaacactttaattctcatgtatggatcacggtgtctcga 204  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  22468354 aatgggaggactgggaaaaaccactatagccaagaaagtttttgacaaccaaaaggtcgttaaacattttgattgtcatgtatggatcacggtgtctcga 22468255  T
Q  205 ccatacaatatagaaaaattgttgaggga 233  Q
    |||||||||||||||||||||||||||||    
T  22468254 ccatacaatatagaaaaattgttgaggga 22468226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 43 - 237
Target Start/End: Complemental strand, 22368380 - 22368186
Alignment:
Q  43 gacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttggaatgggaggactggggaaaaccactttagccaagaaag 142  Q
    |||||||||||||||| | || |||||||||||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||    
T  22368380 gacaaattgattgatttgttggtagagggaagagcacaccgcacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccaagaaag 22368281  T
Q  143 tttttgacaacccaaaggtcgttaaacactttaattctcatgtatggatcacggtgtctcgaccatacaatatagaaaaattgttgagggacata 237  Q
    |||||||||||| ||||||||||||||||||| ||| || | ||||||||||||| ||||||||||| |||| |||||||||| ||| |||||||    
T  22368280 tttttgacaaccaaaaggtcgttaaacactttgattgtcgtttatggatcacggtttctcgaccatataataaagaaaaattgctgaaggacata 22368186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 22358504 - 22358277
Alignment:
Q  9 tgaagctgatgttgtgggctttgacgagccacgcgacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttggaatg 108  Q
    ||||||||||||||| || |||||  || || | ||||||||||||||||   || |||  ||||||||||| || ||| ||||||| ||||||||||||    
T  22358504 tgaagctgatgttgtaggatttgataagacaagagacaaattgattgattttttggtagcaggaagagcagaccggacaattgtctccattgttggaatg 22358405  T
Q  109 ggaggactggggaaaaccactttagccaagaaagtttttgacaacccaaaggtcgttaaacactttaattctcatgtatggatcacggtgtctcgaccat 208  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||| ||  || ||||||||| ||||||||||||||||    
T  22358404 ggaggactgggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaacactttgatcgtcgtgtatggattacggtgtctcgaccat 22358305  T
Q  209 acaatatagaaaaattgttgagggacat 236  Q
    |||||| ||||||| |||||||||||||    
T  22358304 acaatacagaaaaagtgttgagggacat 22358277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 22443245 - 22443014
Alignment:
Q  5 tggatgaagctgatgttgtgggctttgacgagccacgcgacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttgg 104  Q
    |||||||||||||| |||| |||||||| |||||| | |||||||||||||||| | || |||||||||||| ||| |||||||||||||| ||||||||    
T  22443245 tggatgaagctgatattgttggctttgaagagccaagagacaaattgattgatttgttggtagagggaagagaagaccgcacagttgtctccattgttgg 22443146  T
Q  105 aatgggaggactggggaaaaccactttagccaagaaagtttttgacaacccaaaggtcgttaaacactttaattctcatgtatggatcacggtgtctcga 204  Q
    |||||||||| |||| ||||||||| ||||||   || |||||||||||| |||||| ||||| |||||| | | || | ||||||||| |||||||| |    
T  22443145 aatgggaggattgggaaaaaccactctagccagacaaatttttgacaaccaaaaggtagttaagcactttgactgtcttttatggatcatggtgtctcaa 22443046  T
Q  205 ccatacaatatagaaaaattgttgagggacat 236  Q
     ||| |||||| |||||| |||||||||||||    
T  22443045 tcattcaatattgaaaaagtgttgagggacat 22443014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 22632371 - 22632204
Alignment:
Q  5 tggatgaagctgatgttgtgggctttgacgagccacgcgacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttgg 104  Q
    |||||||||||||||||||||| ||||| ||||||   || ||| | ||| |||||||| |||||||||||||||| |||||||||||||| ||| ||||    
T  22632371 tggatgaagctgatgttgtgggatttgaagagccaatagagaaactaattaattggctggtagagggaagagcagatcgcacagttgtctccattattgg 22632272  T
Q  105 aatgggaggactggggaaaaccactttagccaagaaagtttttgacaacccaaaggtcgttaaacact 172  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||    
T  22632271 aatgggaggactggggaaaaccactctagccaagaaagtttttgacaaccgaaagatcgttaaacact 22632204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 22431657 - 22431435
Alignment:
Q  5 tggatgaagctgatgttgtgggctttgacgagccacgcgacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttgg 104  Q
    |||||||||||||||||||||| ||||| |||||| | |||| |||||||||||||||| || | |||| || ||| | |||||| ||||| ||||| ||    
T  22431657 tggatgaagctgatgttgtgggatttgaagagccaagagacatattgattgattggctggtaaatggaaaagaagagctcacagtggtctccattgt-gg 22431559  T
Q  105 aatgggaggactggggaaaaccactttagccaagaaagtttttgacaacccaaaggtcgttaaacactttaattctcatgtatggatcacggtgtctcga 204  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||   | |||| ||||||||||| ||| || | |||||||||| ||||||| |    
T  22431558 aatgggaggactgggaaaaaccactctaaccaagaaagtttttgacaacaacagggtccttaaacactttgattgtcgtttatggatcacagtgtctcaa 22431459  T
Q  205 ccatacaatatagaaaaattgttg 228  Q
    |||||  |||||||||||||||||    
T  22431458 ccatatgatatagaaaaattgttg 22431435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 22636005 - 22635786
Alignment:
Q  9 tgaagctgatgttgtgggctttgacgagccacgcgacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttggaatg 108  Q
    ||||||||||||||| || |||||  ||||| | ||| |||||||||||    || ||| |||||||||||| || ||| ||||||| ||  ||||||||    
T  22636005 tgaagctgatgttgtaggatttgataagccaagagacgaattgattgatcttttggtagcgggaagagcagaccggacaattgtctccatctttggaatg 22635906  T
Q  109 ggaggactggggaaaaccactttagccaagaaagtttttgacaacccaaaggtcgttaaacactttaattctcatgtatggatcacggtgtctcgaccat 208  Q
    |||||||  || ||||||||| |||| ||||||||||||||||||||||||||||| ||| ||||| ||| || ||||||||| ||||||||||||||||    
T  22635905 ggaggacaaggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaatactttgattgtcgtgtatggattacggtgtctcgaccat 22635806  T
Q  209 acaatatagaaaaattgttg 228  Q
    |||||| ||||||| |||||    
T  22635805 acaatacagaaaaagtgttg 22635786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 82 - 236
Target Start/End: Complemental strand, 22354242 - 22354086
Alignment:
Q  82 cgcacagttgtctctattgttggaatgggaggactggggaaaaccactttagccaagaaagtttttgacaacccaaaggtcgttaaacactttaattctc 181  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||  |||||||||||||||| |||||| |||||  ||||| ||| |     
T  22354242 cgcacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccagaaaagtttttgacaaccaaaaggtagttaagaactttgattgtt 22354143  T
Q  182 atg--tatggatcacggtgtctcgaccatacaatatagaaaaattgttgagggacat 236  Q
    |||  ||||||||||||| |||||||||||||| ||||||||| |||||||||||||    
T  22354142 atgtatatggatcacggtatctcgaccatacaacatagaaaaagtgttgagggacat 22354086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 22437137 - 22436909
Alignment:
Q  8 atgaagctgatgttgtgggctttgacgagcc-acgcgacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttggaa 106  Q
    ||||||||||||| ||||||||||| ||||| |  || || |||| || |||||||| |   |||||||| ||| ||  |||||||||||||||| ||||    
T  22437137 atgaagctgatgtcgtgggctttgaagagcccaaacg-catattgtttaattggctggtgaggggaagagtagagcgtgcagttgtctctattgtaggaa 22437039  T
Q  107 tgggaggactggggaaaaccactttagccaagaaagtttttgacaacccaaaggtcgttaaacactttaattctcatgtatggatcacggtgtctcgacc 206  Q
    ||||||| |  || ||||| ||| | ||||||||||||||||| |||   || ||| | ||||| ||| | | ||||||||||||||| ||||||| | |    
T  22437038 tgggagggcaaggaaaaactactctggccaagaaagtttttgagaacatcaaagtcttaaaacaatttgactgtcatgtatggatcacagtgtctcaatc 22436939  T
Q  207 atacaatatagaaaaattgttgagggacat 236  Q
    ||||| || |||||||||||||||||||||    
T  22436938 atacagtaaagaaaaattgttgagggacat 22436909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 22458993 - 22458764
Alignment:
Q  7 gatgaagctgatgttgtgggctttgacgagccacgcgacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttggaa 106  Q
    ||||||| ||||||||| |||||||| |  ||| | |||| | | ||||||||| |||||||||  |||| ||  | |||| ||||| | ||||||||||    
T  22458993 gatgaagatgatgttgtaggctttgaagttccaagagacatactaattgattggttgatagaggagagagaagtgcacacaattgtcaccattgttggaa 22458894  T
Q  107 tgggaggactggggaaaaccactttagccaagaaagtttttgacaacccaaaggtcgttaaacactttaattctcatgtatggatcacggtgtctcgacc 206  Q
     ||||||||  || ||||| ||| | || ||||| ||||||||| ||   ||| |||||||||||||| ||| ||||||||||||||  ||||||| | |    
T  22458893 agggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatc 22458794  T
Q  207 atacaatatagaaaaattgttgagggacat 236  Q
    |||||||||||||   ||| ||||||||||    
T  22458793 atacaatatagaaggcttgctgagggacat 22458764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 22481974 - 22481745
Alignment:
Q  7 gatgaagctgatgttgtgggctttgacgagccacgcgacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttggaa 106  Q
    ||||||| ||||||||| |||||||| |  ||| | |||| | | ||||||||| |||||||||  |||| ||  | |||| ||||| | ||||||||||    
T  22481974 gatgaagatgatgttgtaggctttgaagttccaagagacatactaattgattggttgatagaggagagagaagtgcacacaattgtcaccattgttggaa 22481875  T
Q  107 tgggaggactggggaaaaccactttagccaagaaagtttttgacaacccaaaggtcgttaaacactttaattctcatgtatggatcacggtgtctcgacc 206  Q
     ||||||||  || ||||| ||| | || ||||| ||||||||| ||   ||| |||||||||||||| ||| ||||||||||||||  ||||||| | |    
T  22481874 agggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatc 22481775  T
Q  207 atacaatatagaaaaattgttgagggacat 236  Q
    |||||||||||||   ||| ||||||||||    
T  22481774 atacaatatagaaggcttgctgagggacat 22481745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 21937118 - 21937310
Alignment:
Q  10 gaagctgatgttgtgggctttgacgagccacgcgacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttggaatgg 109  Q
    |||||||| ||||||||||||||| | | | | ||||  |||||||||||| ||||| ||||||| ||||| ||||| ||||| ||| | || |||||||    
T  21937118 gaagctgacgttgtgggctttgacaaacaaagggacattttgattgattggatgataaagggaagggcagagcgcactgttgtttctgtggtaggaatgg 21937217  T
Q  110 gaggactggggaaaaccactttagccaagaaagtttttgacaacccaaaggtcgttaaacactttaattctcatgtatggatcacggtgtctc 202  Q
    |||| |  || ||||||||| |||| ||||||| |||||||| |    | ||||||  ||||||| ||| || |||||||||||| |||||||    
T  21937218 gagggcaaggaaaaaccactctagctaagaaagcttttgacagcaaggatgtcgttggacactttgattgtcgtgtatggatcacagtgtctc 21937310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 22615700 - 22615534
Alignment:
Q  70 ggaagagcagaacgcacagttgtctctattgttggaatgggaggactggggaaaaccactttagccaagaaagtttttgacaacccaaaggtcgttaaac 169  Q
    ||||||| ||| ||||| ||||||||| | || ||||||||||| | ||| ||||||||| | |||||||| |||||||| | |    ||||   |  ||    
T  22615700 ggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttgatagcaaggaggtttgtggac 22615601  T
Q  170 actttaattctcatgtatggatcacggtgtctcgaccatacaatatagaaaaattgttgagggacat 236  Q
    ||||| ||| || |||||||||||| ||||||| | |||||| |||||||   ||||||||||||||    
T  22615600 actttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacat 22615534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 21930424 - 21930527
Alignment:
Q  48 attgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttggaatgggaggactggggaaaaccactttagccaagaaagttttt 147  Q
    ||||||||||||| || || ||||||| | ||| ||||| || || ||| | || ||||||||||| |  || ||||| ||| |||||||||||||||||    
T  21930424 attgattgattggatggtacagggaagggaagagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagttttt 21930523  T
Q  148 gaca 151  Q
    ||||    
T  21930524 gaca 21930527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 22034520 - 22034623
Alignment:
Q  48 attgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttggaatgggaggactggggaaaaccactttagccaagaaagttttt 147  Q
    ||||||||||||| || || ||||||| | ||| ||||| || || ||| | || ||||||||||| |  || ||||| ||| |||||||||||||||||    
T  22034520 attgattgattggatggtacagggaagggaagagcgcactgtggtgtctgtggtaggaatgggagggcaaggaaaaacaactctagccaagaaagttttt 22034619  T
Q  148 gaca 151  Q
    ||||    
T  22034620 gaca 22034623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 22052736 - 22052839
Alignment:
Q  48 attgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttggaatgggaggactggggaaaaccactttagccaagaaagttttt 147  Q
    ||||||||||||| || || ||||||| | ||| ||||| || || ||| | || ||||||||||| |  || ||||| ||| |||||||||||||||||    
T  22052736 attgattgattggatggtaaagggaagggaagagcgcactgtggtttctctggtaggaatgggagggcaaggaaaaacaactctagccaagaaagttttt 22052835  T
Q  148 gaca 151  Q
    ||||    
T  22052836 gaca 22052839  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 236
Target Start/End: Original strand, 21945682 - 21945815
Alignment:
Q  103 ggaatgggaggactggggaaaaccactttagccaagaaagtttttgacaacccaaaggtcgttaaacactttaattctcatgtatggatcacggtgtctc 202  Q
    ||||||||||| |  || ||||||||| ||||||||||||||||||||| |    | ||| ||  ||||||| ||| || |||||||||||| |||||||    
T  21945682 ggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacagcaaggatgtcatttgacactttgattgtcttgtatggatcactgtgtctc 21945781  T
Q  203 gaccatacaatatagaaaaattgttgagggacat 236  Q
     | ||||  || | |||  |||||||||||||||    
T  21945782 aatcatatgatgttgaaggattgttgagggacat 21945815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 22027965 - 22028106
Alignment:
Q  10 gaagctgatgttgtgggctttgacgagccacgcgacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttggaatgg 109  Q
    |||||||| |||||||| ||||| | |||| |  | | ||||| ||||||| || || ||||||| | ||| ||||| || || ||| | || |||||||    
T  22027965 gaagctgaggttgtgggatttgaagcgccaagaaaaagattgactgattggttggtacagggaagggaagagcgcactgtggtgtctgtggtaggaatgg 22028064  T
Q  110 gaggactggggaaaaccactttagccaagaaagtttttgaca 151  Q
    |||| |  || ||||| ||| |||||||||||||||||||||    
T  22028065 gagggcaaggaaaaacaactctagccaagaaagtttttgaca 22028106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 22186953 - 22187094
Alignment:
Q  10 gaagctgatgttgtgggctttgacgagccacgcgacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttggaatgg 109  Q
    |||||||| |||||||| ||||| | |||| |  | | ||||||||| ||| || || ||||||| | ||| ||||| ||| | ||| | || |||||||    
T  22186953 gaagctgaggttgtgggatttgaagcgccaagaaaaagattgattgagtggatggtaaagggaagggaagagcgcactgttctttctgtggtaggaatgg 22187052  T
Q  110 gaggactggggaaaaccactttagccaagaaagtttttgaca 151  Q
    |||| |  || ||||| ||| |||||||||||||||||||||    
T  22187053 gagggcaaggaaaaacaactctagccaagaaagtttttgaca 22187094  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 29611062 - 29610973
Alignment:
Q  5 tggatgaagctgatgttgtgggctttgacgagccacgcgacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctc 95  Q
    ||||||||||||| ||||  |||||||| |||||| | || | ||| |||||||||||| || ||||||||||||| |||||||| |||||    
T  29611062 tggatgaagctgacgttgcaggctttgaagagccaagagaaatattaattgattggctggta-agggaagagcagagcgcacagtcgtctc 29610973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 27294606 - 27294654
Alignment:
Q  103 ggaatgggaggactggggaaaaccactttagccaagaaagtttttgaca 151  Q
    |||||||||||||  || ||||||||| ||| |||||||||||||||||    
T  27294606 ggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgaca 27294654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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