View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_low_25 (Length: 248)
Name: NF5335_low_25
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 7721056 - 7721268
Alignment:
| Q |
22 |
gagtctccaagttaaataattgagttattgaccttgggagctcttcaaccttataacaatgagaaagatcaagatagcttagatgtttcatccttccaat |
121 |
Q |
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||||||||||||||| ||||| |||||| |||||||||||||| |||||| ||| |||| |||||| |||||||| ||||||||||||||||||||||| |
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| T |
7721056 |
gagtctccaagttaattaattcagttatagaccttgggagctcctcaaccatatcacaacaagaaaggtcaagatatcttagatgtttcatccttccaat |
7721155 |
T |
|
| Q |
122 |
actagatggaatcttcgttgactttgtgttggtaagattcatcacacgaaatcgcctagaacttgacaggatggaattacaagcagacaattccaataga |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7721156 |
actagatggaatcttcgttgactttgtgttggtaagattcatcacacgaaatcgcctagaacttgacagaatggaattacaagcagacaattccaataga |
7721255 |
T |
|
| Q |
222 |
ctttcactatata |
234 |
Q |
| |
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||||||||||||| |
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|
| T |
7721256 |
ctttcactatata |
7721268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 7717226 - 7717418
Alignment:
| Q |
22 |
gagtctccaagttaaataattgagttattgaccttgggagctcttcaaccttataacaatgagaaagatcaagatagcttagatgtttcatccttccaat |
121 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
7717226 |
gagtctccaagttaaataattgagttatagaccttgg-agctcttcaaccttataacaatgagaaagatcacaatatcttagatgtttcatccttccaat |
7717324 |
T |
|
| Q |
122 |
actagatggaatcttcgttgactttgtgttggtaagattcatcacacgaaatcgcctagaacttgacaggatggaattacaagcagacaattcca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||||| ||||| |
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| T |
7717325 |
actagatggaatcttcgttgactttgtgttggtaagattcatca-acgaaatcgtctcgaacttgacaggatggaattacacgcagacagttcca |
7717418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 7495753 - 7495561
Alignment:
| Q |
22 |
gagtctccaagttaaataattgagttattgaccttgggagctcttcaaccttataacaatgagaaagatcaagatagcttagatgtttcatccttccaat |
121 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||||||||||||||||| || ||||| ||||||||||||||| ||||| |||||||| || ||||| |
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|
| T |
7495753 |
gagtctccaagttaactaattcagttatagaccttgggagctcttcaaccataaaacaacaagaaagatcaagataccttagctgtttcattctaccaat |
7495654 |
T |
|
| Q |
122 |
actagatggaatcttcgttgactttgtgttggtaagattcatcacacgaaatcgcctagaacttgacaggatggaattacaagcagacaattc |
214 |
Q |
| |
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|| ||||||||| |||||| | || || | ||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
7495653 |
acaagatggaatattcgttaaattcatgaagctaagattcagcacacgaaatcgtctagaacttgccaggatggaattacaagcagacaattc |
7495561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 7521411 - 7521219
Alignment:
| Q |
22 |
gagtctccaagttaaataattgagttattgaccttgggagctcttcaaccttataacaatgagaaagatcaagatagcttagatgtttcatccttccaat |
121 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||| || ||||| |
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|
| T |
7521411 |
gagtctccaagttaactaattcagttatagaccttgggagctcttcaaccttaaaacaacaagaaagatcaagataccttagctgtttcattctaccaat |
7521312 |
T |
|
| Q |
122 |
actagatggaatcttcgttgactttgtgttggtaagattcatcacacgaaatcgcctagaacttgacaggatggaattacaagcagacaattc |
214 |
Q |
| |
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|| ||||||||| |||||||| | | | ||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
7521311 |
acaagatggaatattcgttgaatacattaagctaagattcagcacacgaaatcgtctagaacttgccaggatggaattacaagcagacaattc |
7521219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 7127781 - 7127973
Alignment:
| Q |
22 |
gagtctccaagttaaataattgagttattgaccttgggagctcttcaaccttataacaatgagaaagatcaagatagcttagatgtttcatccttccaat |
121 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||||||||||||||||| || ||||| ||||||||||||||| ||||| |||||||| || ||||| |
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| T |
7127781 |
gagtctccaagttaactaattcagttatagaccttgggagctcttcaaccataaaacaacaagaaagatcaagataccttagctgtttcattctaccaat |
7127880 |
T |
|
| Q |
122 |
actagatggaatcttcgttgactttgtgttggtaagattcatcacacgaaatcgcctagaacttgacaggatggaattacaagcagacaattc |
214 |
Q |
| |
|
|| ||||||||| |||||| | || || | ||||||||| |||||||||||| |||||||||| |||||||||||||| |||||| ||||| |
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| T |
7127881 |
acaagatggaatattcgttaaattcatgaagctaagattcagcacacgaaatcgtctagaacttgccaggatggaattactagcagataattc |
7127973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 7529476 - 7529284
Alignment:
| Q |
22 |
gagtctccaagttaaataattgagttattgaccttgggagctcttcaaccttataacaatgagaaagatcaagatagcttagatgtttcatccttccaat |
121 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||||||||||||||||| || ||||| ||||||||||||||| ||||| |||||||| || ||||| |
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|
| T |
7529476 |
gagtctccaagttaactaattcagttatagaccttgggagctcttcaaccataaaacaacaagaaagatcaagataccttagctgtttcattctaccaat |
7529377 |
T |
|
| Q |
122 |
actagatggaatcttcgttgactttgtgttggtaagattcatcacacgaaatcgcctagaacttgacaggatggaattacaagcagacaattc |
214 |
Q |
| |
|
|| ||||||||| |||||| | || | | ||||||||| |||||||||||| |||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
7529376 |
acaagatggaatattcgttaaattcaggaagctaagattcagcacacgaaatcgtctagaacttgccaggatggaattacaagcacacaattc |
7529284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 7483354 - 7483165
Alignment:
| Q |
22 |
gagtctccaagttaaataattgagttattgaccttgggagctcttcaaccttataacaatgagaaagatcaagatagcttagatgtttcatccttccaat |
121 |
Q |
| |
|
||||||||||||||| ||| | ||||||||||||||||||||| |||||| | ||||| |||||| |||||||| |||||||||||||| || ||||| |
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|
| T |
7483354 |
gagtctccaagttaactaaatcagttattgaccttgggagctcctcaaccattctacaataagaaaggtcaagataccttagatgtttcattctaccaat |
7483255 |
T |
|
| Q |
122 |
actagatggaatcttcgttgactttgtgttggtaagattcatcacacgaaatcgcctagaacttgacaggatggaattacaagcagacaattc |
214 |
Q |
| |
|
|| ||||||||| ||| |||| | | ||| ||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||| |
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|
| T |
7483254 |
acaagatggaatattctttgattctatgt---taagattcagcacacgaaatcgtctagaacttgacatgatggaattacaggcagacaattc |
7483165 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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