View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5335_low_27 (Length: 248)

Name: NF5335_low_27
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5335_low_27
NF5335_low_27
[»] chr8 (3 HSPs)
chr8 (18-245)||(42473216-42473443)
chr8 (85-145)||(42480607-42480667)
chr8 (143-221)||(33361830-33361908)
[»] scaffold0005 (1 HSPs)
scaffold0005 (143-221)||(40692-40770)
[»] chr5 (1 HSPs)
chr5 (143-221)||(22272137-22272215)
[»] chr4 (1 HSPs)
chr4 (143-221)||(14798957-14799035)
[»] chr3 (2 HSPs)
chr3 (143-221)||(2734821-2734899)
chr3 (143-221)||(40923867-40923945)
[»] chr1 (1 HSPs)
chr1 (143-221)||(27129471-27129549)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 42473443 - 42473216
Alignment:
Q  18 acccacaaagatgaagaacgtttgacttcctcacccaaacctgaaaactgtctcgagaacccgaaagttgaagaaaatgaaaaacaaccttccaaggttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42473443 acccacaaagatgaagaacgtttgacttcctcacccaaacctgaaaactgtctcgagaacctgaaagttgaagaaaatgaaaaacaaccttccaaggttc 42473344  T
Q  118 ctagagttgcatatggtgagttggagaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgt 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42473343 ctagagttgcatatggtgagttggggaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgt 42473244  T
Q  218 tcgtaatttaacacttcaagatgttgat 245  Q
    ||||||||||||||||||||||||||||    
T  42473243 tcgtaatttaacacttcaagatgttgat 42473216  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 42480667 - 42480607
Alignment:
Q  85 ttgaagaaaatgaaaaacaaccttccaaggttcctagagttgcatatggtgagttggagaa 145  Q
    ||||||||||||| || |||| ||||||||||| ||||||||||| || |||||| |||||    
T  42480667 ttgaagaaaatgagaagcaactttccaaggttcgtagagttgcatgtgatgagtttgagaa 42480607  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 33361830 - 33361908
Alignment:
Q  143 gaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgt 221  Q
    |||||||||||| |||||||  ||   |||||||  ||| |||||| |||||||||||||||| ||||||| |||||||    
T  33361830 gaatgttattgaagtgcaaagttcgactcaaattctgaataatcgactatgtctcaagacttcaattgacactgttcgt 33361908  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 40692 - 40770
Alignment:
Q  143 gaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgt 221  Q
    |||||||||||| |||||||  ||   |||||||  ||| |||||| |||||||||||||||| ||||||| |||||||    
T  40692 gaatgttattgaagtgcaaagttcgattcaaattctgaataatcgactatgtctcaagacttcaattgacactgttcgt 40770  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 22272215 - 22272137
Alignment:
Q  143 gaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgt 221  Q
    |||||||||||| |||||||  ||   |||||||  ||| |||||| |||||||||||||||| ||||||| |||||||    
T  22272215 gaatgttattgaagtgcaaagttcgagtcaaattctgaataatcgactatgtctcaagacttcaattgacactgttcgt 22272137  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 14799035 - 14798957
Alignment:
Q  143 gaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgt 221  Q
    |||||||||||| |||||||  ||   |||||||  ||| |||||| |||||||||||||||| ||||||| |||||||    
T  14799035 gaatgttattgaagtgcaaagttcgagtcaaattctgaataatcgactatgtctcaagacttcaattgacactgttcgt 14798957  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 2734821 - 2734899
Alignment:
Q  143 gaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgt 221  Q
    |||||||||||| |||||||  ||   |||||||  ||| |||||| |||||||||||||||| ||||||| |||||||    
T  2734821 gaatgttattgaagtgcaaagttcgagtcaaattctgaataatcgactatgtctcaagacttcaattgacactgttcgt 2734899  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 40923867 - 40923945
Alignment:
Q  143 gaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgt 221  Q
    |||||||||||| |||||||  ||   |||||||  ||| |||||| |||||||||||||||| ||||||| |||||||    
T  40923867 gaatgttattgaagtgcaaagttcgagtcaaattctgaataatcgactatgtctcaagacttcaattgacactgttcgt 40923945  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 27129471 - 27129549
Alignment:
Q  143 gaatgttattgatgtgcaaaaatcagatcaaattaagaagaatcgagtatgtctcaagacttcgattgacattgttcgt 221  Q
    |||||||||||| |||||||  ||   |||||||  ||| |||||| ||||||||||| |||| |||||||||||||||    
T  27129471 gaatgttattgaagtgcaaagttcgagtcaaattctgaataatcgaatatgtctcaaggcttcaattgacattgttcgt 27129549  T

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