View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5335_low_3 (Length: 488)

Name: NF5335_low_3
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5335_low_3
NF5335_low_3
[»] chr1 (5 HSPs)
chr1 (23-224)||(2312213-2312419)
chr1 (75-145)||(2927117-2927189)
chr1 (287-384)||(12318374-12318471)
chr1 (293-378)||(9109275-9109360)
chr1 (207-258)||(3315688-3315737)
[»] chr6 (3 HSPs)
chr6 (287-382)||(5739845-5739940)
chr6 (327-382)||(11660825-11660880)
chr6 (287-350)||(17763245-17763312)
[»] chr5 (5 HSPs)
chr5 (287-384)||(316983-317083)
chr5 (273-378)||(10700486-10700591)
chr5 (287-371)||(10054666-10054750)
chr5 (304-384)||(8038418-8038498)
chr5 (287-383)||(8445916-8446008)
[»] chr4 (3 HSPs)
chr4 (287-378)||(41961624-41961715)
chr4 (293-378)||(6719781-6719866)
chr4 (326-362)||(28684697-28684733)
[»] chr3 (2 HSPs)
chr3 (288-384)||(5270592-5270689)
chr3 (287-384)||(20937877-20937974)
[»] chr8 (1 HSPs)
chr8 (302-384)||(7624813-7624894)
[»] chr2 (1 HSPs)
chr2 (335-384)||(16676449-16676498)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 2312213 - 2312419
Alignment:
Q  23 cataatctatgaattctaagatcaatgattaaggttgtatttttgtagtgctttgaagttttctttactagaatgtttccg--attattttagaccacta 120  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||||||||||| ||||||| |  |||| ||||||| ||||    
T  2312213 cataatctatgaattctaagatcaatgattaaggttatatttttgcagtattttgaagttttctttactagcatgtttctgtcattactttagactacta 2312312  T
Q  121 gatgaaaatgttgatctgcatactgctccatcctggttttaattaa---atgataactcaagttgtttcaattgaattaagcattatactcatgccacaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2312313 gatgaaaatgttgatctgcatactgctccatcctggttttaattaaatgatgataactcaagttgtttcaattgaattaaacattatactcatgccacaa 2312412  T
Q  218 gaatata 224  Q
    |||||||    
T  2312413 gaatata 2312419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 2927189 - 2927117
Alignment:
Q  75 ttgaagttttctttactagaatgtttccg--attattttagaccactagatgaaaatgttgatctgcatactg 145  Q
    ||||||||||||||||||| ||||||| |  ||| |||||||| |||||||||||||||||||||||||||||    
T  2927189 ttgaagttttctttactagcatgtttctgtcattcttttagactactagatgaaaatgttgatctgcatactg 2927117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 384
Target Start/End: Original strand, 12318374 - 12318471
Alignment:
Q  287 gtatcaatgacaactaataaccaaaataatcataaacaataacaacggatctagatctaatctaacaaccaggtgtaaaacaaaaccacaattgaacc 384  Q
    ||||||||| |||| |||||||||||||| || |  ||| |||||| ||||||||| ||| ||| ||||||  |||||| ||||| || |||||||||    
T  12318374 gtatcaatggcaaccaataaccaaaataagcacacgcaacaacaacagatctagatttaacctagcaaccaattgtaaagcaaaatcataattgaacc 12318471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 378
Target Start/End: Original strand, 9109275 - 9109360
Alignment:
Q  293 atgacaactaataaccaaaataatcataaacaataacaacggatctagatctaatctaacaaccaggtgtaaaacaaaaccacaat 378  Q
    |||||||| |||||| ||||||| || ||  ||||||||| ||||||||||||| ||| ||||||  ||| || || |||||||||    
T  9109275 atgacaaccaataactaaaataaccacaagtaataacaacagatctagatctaagctagcaaccaactgtgaagcataaccacaat 9109360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 3315737 - 3315688
Alignment:
Q  207 tcatgccacaagaatatatagcagccaagcaatgtggatgagttagtgccta 258  Q
    ||||| |||||||||||| ||||| |||||||  ||||||||||||||||||    
T  3315737 tcatgtcacaagaatatacagcagacaagcaa--tggatgagttagtgccta 3315688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 287 - 382
Target Start/End: Original strand, 5739845 - 5739940
Alignment:
Q  287 gtatcaatgacaactaataaccaaaataatcataaacaataacaacggatctagatctaatctaacaaccaggtgtaaaacaaaaccacaattgaa 382  Q
    |||||||||| |||||||||||||||||||||||| ||| ||||||  ||||| |||||||||| |||||| ||||||| ||||||||||| ||||    
T  5739845 gtatcaatgataactaataaccaaaataatcataatcaacaacaacatatctaaatctaatctagcaaccaagtgtaaagcaaaaccacaactgaa 5739940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 327 - 382
Target Start/End: Complemental strand, 11660880 - 11660825
Alignment:
Q  327 aacaacggatctagatctaatctaacaaccaggtgtaaaacaaaaccacaattgaa 382  Q
    |||||| ||||||||||||||||| |||||| ||||||| |||||||||| |||||    
T  11660880 aacaacagatctagatctaatctagcaaccaagtgtaaagcaaaaccacatttgaa 11660825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 17763312 - 17763245
Alignment:
Q  287 gtatcaatgacaactaataacca-----aaataatcataaacaataacaacggatctagatctaatcta 350  Q
    |||||||||||||| ||||||||     ||||||||| |||||||||||||  ||||||||||||||||    
T  17763312 gtatcaatgacaaccaataaccaaatgtaaataatcacaaacaataacaac-aatctagatctaatcta 17763245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 384
Target Start/End: Complemental strand, 317083 - 316983
Alignment:
Q  287 gtatcaatgacaactaataaccaaaataatcataaacaataacaacg---gatctagatctaatctaacaaccaggtgtaaaacaaaaccacaattgaac 383  Q
    |||||| ||||||| |||||||||||||| || || ||| |||||||   ||||||||||| ||||| |||||| ||||||| |||||||||||||||||    
T  317083 gtatcagtgacaaccaataaccaaaataaccacaagcaacaacaacgacagatctagatcttatctagcaaccaagtgtaaagcaaaaccacaattgaac 316984  T
Q  384 c 384  Q
    |    
T  316983 c 316983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 273 - 378
Target Start/End: Original strand, 10700486 - 10700591
Alignment:
Q  273 gatgtgtggggttggtatcaatgacaactaataaccaaaataatcataaacaataacaacggatctagatctaatctaacaaccaggtgtaaaacaaaac 372  Q
    |||||||| ||  ||||||||||||||| ||||||||||||||    || ||||||||| ||||||| || ||||||||||| || ||||||| ||||||    
T  10700486 gatgtgtgaggcgggtatcaatgacaaccaataaccaaaataactgcaagcaataacaatggatctatatttaatctaacaatcaagtgtaaatcaaaac 10700585  T
Q  373 cacaat 378  Q
    ||||||    
T  10700586 cacaat 10700591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 371
Target Start/End: Original strand, 10054666 - 10054750
Alignment:
Q  287 gtatcaatgacaactaataaccaaaataatcataaacaataacaacggatctagatctaatctaacaaccaggtgtaaaacaaaa 371  Q
    |||||||||||||||||||| |||||||| || |  ||| | ||||  |||||||||||||||| |||||| ||||||| |||||    
T  10054666 gtatcaatgacaactaataatcaaaataaccacatgcaacatcaacaaatctagatctaatctagcaaccaagtgtaaagcaaaa 10054750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 8038498 - 8038418
Alignment:
Q  304 taaccaaaataatcataaacaataacaacggatctagatctaatctaacaaccaggtgtaaaacaaaaccacaattgaacc 384  Q
    ||||||||| ||||| || ||| |||||  ||||| ||||||||||| |||||| |||||||  ||||||||||| |||||    
T  8038498 taaccaaaacaatcacaatcaacaacaatagatcttgatctaatctagcaaccaagtgtaaagaaaaaccacaatcgaacc 8038418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 383
Target Start/End: Complemental strand, 8446008 - 8445916
Alignment:
Q  287 gtatcaatgacaactaataaccaaaataatcataaacaataacaacggatctagatctaatctaacaaccaggtgtaaaacaaaaccacaattgaac 383  Q
    ||||||||| ||||| |||| ||| |||| || || ||| |||||| ||||||||||||||    |||||| ||||||||||||||| |||| ||||    
T  8446008 gtatcaatggcaactgataatcaagataaccacaagcaacaacaacagatctagatctaat----caaccaagtgtaaaacaaaaccgcaatcgaac 8445916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 378
Target Start/End: Complemental strand, 41961715 - 41961624
Alignment:
Q  287 gtatcaatgacaactaataaccaaaataatcataaacaataacaacggatctagatctaatctaacaaccaggtgtaaaacaaaaccacaat 378  Q
    |||||||||||||| ||||||||||| ||  | || ||| |||||  |||||||||||||||||  |||||||| |||| ||||||||||||    
T  41961715 gtatcaatgacaaccaataaccaaaaaaactacaagcaacaacaatagatctagatctaatctagtaaccaggtttaaagcaaaaccacaat 41961624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 378
Target Start/End: Complemental strand, 6719866 - 6719781
Alignment:
Q  293 atgacaactaataaccaaaataatcataaacaataacaacggatctagatctaatctaacaaccaggtgtaaaacaaaaccacaat 378  Q
    |||||||| ||||||||||| | ||| |  ||| |||||| |||||||||||||||||  ||||| ||| ||| ||||||||||||    
T  6719866 atgacaaccaataaccaaaacagtcacaggcaaaaacaacagatctagatctaatctagaaaccaagtgcaaagcaaaaccacaat 6719781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 362
Target Start/End: Original strand, 28684697 - 28684733
Alignment:
Q  326 taacaacggatctagatctaatctaacaaccaggtgt 362  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  28684697 taacaacggatttagatctaatctaacaaccaagtgt 28684733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 384
Target Start/End: Complemental strand, 5270689 - 5270592
Alignment:
Q  288 tatcaatgacaactaataaccaaaataatc-ataaacaataacaacggatctagatctaatctaacaaccaggtgtaaaacaaaaccacaattgaacc 384  Q
    ||||||||||||| |||||| |||| || | | || ||| |||||  ||||||||||||||||| |||||| ||||||  |||||||||||| |||||    
T  5270689 tatcaatgacaaccaataacaaaaaaaaaccacaagcaacaacaatagatctagatctaatctagcaaccaagtgtaatgcaaaaccacaatcgaacc 5270592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 384
Target Start/End: Complemental strand, 20937974 - 20937877
Alignment:
Q  287 gtatcaatgacaactaataaccaaaataatcataaacaataacaacggatctagatctaatctaacaaccaggtgtaaaacaaaaccacaattgaacc 384  Q
    |||||||||||||||||||| ||||||||  | || ||  ||||||  ||||||||||||||||  || || |||||||  |||| |||||| |||||    
T  20937974 gtatcaatgacaactaataagcaaaataactacaagcagcaacaacaaatctagatctaatctattaatcaagtgtaaagtaaaatcacaatcgaacc 20937877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 384
Target Start/End: Original strand, 7624813 - 7624894
Alignment:
Q  302 aataaccaaaataatcataaacaataacaacggatctagatctaatctaacaaccaggtgtaaaacaaaaccacaattgaacc 384  Q
    |||||||||||||  |  |||||| ||||||| |||||||||||| ||| |||||| |||||||  ||||||||||| |||||    
T  7624813 aataaccaaaatagccgcaaacaacaacaacgaatctagatctaa-ctagcaaccatgtgtaaagtaaaaccacaatcgaacc 7624894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 16676498 - 16676449
Alignment:
Q  335 atctagatctaatctaacaaccaggtgtaaaacaaaaccacaattgaacc 384  Q
    |||||||||||||||| |||| | ||||||| |||||||||||| |||||    
T  16676498 atctagatctaatctagcaacaaagtgtaaatcaaaaccacaatcgaacc 16676449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University