View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_low_31 (Length: 243)
Name: NF5335_low_31
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 22037081 - 22036859
Alignment:
| Q |
1 |
gttcaacaatagtcttcacattgatagattatgtgaccaatttgaggaagagttaaatacttttctatgtcaaatcatggttaaccgagttcgaagacaa |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
22037081 |
gttcgacaatagtcttcacattgatagattatgtgaccaattttaggaagagttc--tacttttctatgtcaaatcatggttaactgagttcgaatacaa |
22036984 |
T |
|
| Q |
101 |
ggttggagatatttctgattatgtggactaccttcgatcagtttccccctccttgattctcttattggtaatgttacaagtttgggttccttttatagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22036983 |
ggttggagatatttctgattatgtggactaccttcgatcagtttccccctccttgattctcttattggtaatgttacaagtttgggttccttttatagta |
22036884 |
T |
|
| Q |
201 |
tcttattgttcaacctgaacttata |
225 |
Q |
| |
|
|||||||||| |||||||||||||| |
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| T |
22036883 |
tcttattgttgaacctgaacttata |
22036859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 58 - 225
Target Start/End: Complemental strand, 18177021 - 18176854
Alignment:
| Q |
58 |
tacttttctatgtcaaatcatggttaaccgagttcgaagacaaggttggagatatttctgattatgtggactaccttcgatcagtttccccctccttgat |
157 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||| || |
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| T |
18177021 |
tacttttctatgtcaaatcatggttaattgagttcgaagacaaggttggagatatttctgattatgtggactaccttctatcaatttgcccctccttaat |
18176922 |
T |
|
| Q |
158 |
tctcttattggtaatgttacaagtttgggttccttttatagtatcttattgttcaacctgaacttata |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18176921 |
tctcttattggtaatgttacaagtttgggttccttttatagtatcttattgttgaacctgaacttata |
18176854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 121 - 225
Target Start/End: Original strand, 18222843 - 18222947
Alignment:
| Q |
121 |
atgtggactaccttcgatcagtttccccctccttgattctcttattggtaatgttacaagtttgggttccttttatagtatcttattgttcaacctgaac |
220 |
Q |
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||||||||||||||| |||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18222843 |
atgtggactaccttctatcaatttgcccctccttaattctcttattgataatgttacaagtttgggttccttttatagtatcttattgttgaacctgaac |
18222942 |
T |
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| Q |
221 |
ttata |
225 |
Q |
| |
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||||| |
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| T |
18222943 |
ttata |
18222947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 18204871 - 18204938
Alignment:
| Q |
58 |
tacttttctatgtcaaatcatggttaaccgagttcgaagacaaggttggagatatttctgattatgtg |
125 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18204871 |
tacttttctatgtcaaatcatggttaattgagttcgaagacaaggttggagatatttctgattatgtg |
18204938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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