View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_low_32 (Length: 241)
Name: NF5335_low_32
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_32 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 15755355 - 15755580
Alignment:
| Q |
1 |
tcatactctattttctcaattttactactttctgcttcgtcttcatcatgcctccaagacaagctcctcaagtggttcaacggaacactgattcacctta |
100 |
Q |
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| T |
15755355 |
tcatactctgttttctcaattctactactctctgcttcgtcctcatcatgcctccaagagaagatcctcaagttgttcaaccaaacactgattcacctta |
15755454 |
T |
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| Q |
101 |
ctacgtgcatccaagtgaaaatcctggctctgtgttagttacgcctcttcttgacggttctaactacctcgcatggcatcgttctatgaaatgcgcttta |
200 |
Q |
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| T |
15755455 |
ctacatgcatccaagtgaaaatcctggctct-tgttagttacacctcttcttgacggttctaactacctc----ggcatcattctatgaaacgcgcttta |
15755549 |
T |
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| Q |
201 |
ggcgccaagaacaagctttcctttgatgatg |
231 |
Q |
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| T |
15755550 |
ggcgccaagaacaagctttcctttgttgatg |
15755580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 6082 - 5962
Alignment:
| Q |
6 |
ctctattttctcaattttactacttt-ctgcttcgtcttcatcatgcctccaagacaagctcctcaagtggttcaacggaacactgattcaccttactac |
104 |
Q |
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|||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||||||||||| |
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| T |
6082 |
ctctgttttctcaattctactacttttctgcttcgtcctcatcatgcctccaagacaagctcctcgggttattcaaccaaacactgattcaccttactat |
5983 |
T |
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| Q |
105 |
gtgcatccaagtgaaaatcct |
125 |
Q |
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| T |
5982 |
gtgcattcgagtgaaaatcct |
5962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 231
Target Start/End: Original strand, 17118153 - 17118344
Alignment:
| Q |
40 |
tcttcatcatgcctccaagacaagctcctcaagtggttcaacggaacactgattcaccttactacgtgcatccaagtgaaaatcctggctctgtgttagt |
139 |
Q |
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| T |
17118153 |
tcttcatcatccctcctcgtcaagctcctcagattgttcaatcaaacactgattcaccgtattatgtgcatcctaatgaaggaccaagctatgtgatagt |
17118252 |
T |
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| Q |
140 |
tacgcctcttcttgacggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctttcctttgatgatg |
231 |
Q |
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| T |
17118253 |
tacacctcttcttgatggttctaactacctcgcatggcatcgttctatgaagcgcccattaggagcgaagaacaaactttcctttgttgatg |
17118344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 190
Target Start/End: Complemental strand, 13139970 - 13139865
Alignment:
| Q |
85 |
acactgattcaccttactacgtgcatccaagtgaaaatcctggctctgtgttagttacgcctcttcttgacggttctaactacctcgcatggcatcgttc |
184 |
Q |
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| T |
13139970 |
acactgattttccttattacgtgcatcctagtgaaggacctaactttgtgctagttacgcctcttcttgatggttccaactacctcgcatgaaatcgttc |
13139871 |
T |
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| Q |
185 |
tatgaa |
190 |
Q |
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|||||| |
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| T |
13139870 |
tatgaa |
13139865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 26628696 - 26628758
Alignment:
| Q |
156 |
ggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctt |
218 |
Q |
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| T |
26628696 |
ggttctaactacctcgcatggagtcgttctatgcaacgtgctttaggtgccaagaataagctt |
26628758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 26734672 - 26734734
Alignment:
| Q |
156 |
ggttctaactacctcgcatggcatcgttctatgaaatgcgctttaggcgccaagaacaagctt |
218 |
Q |
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| T |
26734672 |
ggttctaactacctcgcatggagtcgttctatgcaacgtgctttaggtgccaagaataagctt |
26734734 |
T |
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