View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5335_low_33 (Length: 241)

Name: NF5335_low_33
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5335_low_33
NF5335_low_33
[»] chr3 (13 HSPs)
chr3 (1-224)||(22431700-22431920)
chr3 (1-224)||(22632414-22632637)
chr3 (1-224)||(22358551-22358777)
chr3 (12-224)||(22631029-22631241)
chr3 (1-224)||(22468497-22468720)
chr3 (1-156)||(22636052-22636207)
chr3 (1-224)||(22368461-22368681)
chr3 (7-224)||(22443294-22443511)
chr3 (4-224)||(22437186-22437406)
chr3 (5-156)||(22459033-22459181)
chr3 (5-156)||(22482014-22482162)
chr3 (1-42)||(22630988-22631029)
chr3 (108-156)||(22207785-22207833)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22431700 - 22431920
Alignment:
Q  1 ttctgtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatctttttcagtatttgtatcttttatttcactcattcg 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||| |||||    
T  22431700 ttctgtttgttgcagaactagttgatgctttatccgaagaagattggatatggaagccatgatctttttcact---tgtatcttttatttcactaattcg 22431796  T
Q  101 ggatttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttgatcaagtcaactccagcagcacatcctggatctgaagattgttgg 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||| ||||| ||||| |||||||||||     
T  22431797 ggatttgatgttctgaatcttgtaagctatttggagacgaagaatcttagttttgatcaagtcaagaccagcagcgcatccaggatcagaagattgttgt 22431896  T
Q  201 tcctcaaggaagatataatcatca 224  Q
    || |||||||||||||||||||||    
T  22431897 tcttcaaggaagatataatcatca 22431920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22632414 - 22632637
Alignment:
Q  1 ttctgtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatctttttcagtatttgtatcttttatttcactcattcg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||   | |||| ||||||||||| || ||||     
T  22632414 ttctgtttgttgcagaactacttgatggtttatccgaagaagattggatgtggaagccatgatctttttc---acttgtttcttttatttctctaattct 22632510  T
Q  101 ggatttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttgatcaagtcaa---ctccagcagcacatcctggatctgaagattgt 197  Q
    ||||||||||| ||||||||||| ||| |||||||||||||||||| ||||||| | ||||||||   |||||| ||||||||| ||||| |||||||||    
T  22632511 ggatttgatgttctgaatcttgtcagcaatttggagacgaagaatcttagttttcaccaagtcaatagctccagtagcacatccaggatcagaagattgt 22632610  T
Q  198 tggtcctcaaggaagatataatcatca 224  Q
    || |||||||| |||||||||||||||    
T  22632611 tgttcctcaagaaagatataatcatca 22632637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22358551 - 22358777
Alignment:
Q  1 ttctgtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatctttttcagtatttgtatcttttatttcactcattcg 100  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||| ||||||||||| |||||    
T  22358551 ttctgtttgttgcataactagttgatgctttatccgaagaagattggatatagaagccatgatctttttcagttcttgtatcatttatttcacttattcg 22358650  T
Q  101 ggatttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttgatcaagt---caactccagcagcacatcctggatctgaagattgt 197  Q
    ||||||||||| ||||||||||||||||||||||||||| | |  |||||||||||   |||    ||| |||||||||||||| ||||| | ||  |||    
T  22358651 ggatttgatgttctgaatcttgtaagctatttggagacggaaagccatagttttgacacagtttgtaacaccagcagcacatccaggatcaggagcatgt 22358750  T
Q  198 tggtcctcaaggaagatataatcatca 224  Q
    || |||||||| |||||||||||||||    
T  22358751 tgttcctcaagaaagatataatcatca 22358777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 22631029 - 22631241
Alignment:
Q  12 gcagaactacttgatgctttatccgaagaagattggatatggaagccatgatctttttcagtatttgtatcttttatttcactcattcgggatttgatgt 111  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |   ||| ||||||||||| || ||| ||||||||||||    
T  22631029 gcagaactacttgatggtttatccgaagaagattggatgtggaagccatgatctttttcact---tgtttcttttatttctctaatttgggatttgatgt 22631125  T
Q  112 cctgaatcttgtaagctatttggagacgaagaatcatagttttgatcaagtcaa---ctccagcagcacatcctggatctgaagattgttggtcctcaag 208  Q
     ||||||||||||||| |||||||||||||||||| ||||||| | ||||||||   |||||||||||||||| ||||| | ||  ||||| |||||| |    
T  22631126 tctgaatcttgtaagcaatttggagacgaagaatcttagttttcaccaagtcaacggctccagcagcacatccaggatcaggagcatgttgttcctcatg 22631225  T
Q  209 gaagatataatcatca 224  Q
    ||||||||||||||||    
T  22631226 gaagatataatcatca 22631241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22468497 - 22468720
Alignment:
Q  1 ttctgtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatctttttcagtatttgtatcttttatttcactcattcg 100  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||||||| | |||||||||||||||| || |   ||| ||||||||||| || |||||    
T  22468497 ttctgtttgttgcagaactgcttgatggtttatctgaagaagattggatgttgaagccatgatcttttgcact---tgtttcttttatttctctgattcg 22468593  T
Q  101 ggatttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttgatcaagtcaa---ctccagcagcacatcctggatctgaagattgt 197  Q
    ||| ||||||| |||||||||||||| ||||||||||||||| ||| ||||||| | ||||||||   | |||||||||||||| ||||| |||||||||    
T  22468594 ggacttgatgttctgaatcttgtaagttatttggagacgaaggatcttagttttcaccaagtcaacagcaccagcagcacatccaggatcagaagattgt 22468693  T
Q  198 tggtcctcaaggaagatataatcatca 224  Q
    || |||||||| |||||||||||||||    
T  22468694 tgttcctcaagtaagatataatcatca 22468720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 22636052 - 22636207
Alignment:
Q  1 ttctgtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatctttttcagtatttgtatcttttatttcactcattcg 100  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||  ||||||| ||||||||||| |||||    
T  22636052 ttctgtttgttgcagaactagttgatgctttatccgatgaagattggatatagaagccatgatctttttcagttcttgtatcatttatttcacttattcg 22636151  T
Q  101 ggatttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttga 156  Q
    ||||||||||| ||||||||||||||||||||||||||| | |  |||||||||||    
T  22636152 ggatttgatgttctgaatcttgtaagctatttggagacggaaagccatagttttga 22636207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22368461 - 22368681
Alignment:
Q  1 ttctgtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatctttttcagtatttgtatcttttatttcactcattcg 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| ||||||| |||||   | |||| ||||||||||| || ||| |    
T  22368461 ttctgtttgttgcagaactacttgatgctttatccaaagaagattggatgtcgaagtcatgatccttttc---acttgtttcttttatttccctaatttg 22368557  T
Q  101 ggatttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttgatcaagtcaactccagcagcacatcctggatctgaagattgttgg 200  Q
    ||| ||||||| ||||||||| ||||| ||||||||||| ||  |  ||||||||| |||||||||  ||||||||||||| || || |||||||| ||     
T  22368558 ggaattgatgttctgaatcttataagcaatttggagacgtagttttgtagttttgagcaagtcaacagcagcagcacatccaggttcagaagattgatgt 22368657  T
Q  201 tcctcaaggaagatataatcatca 224  Q
    ||||||||||||||||||||||||    
T  22368658 tcctcaaggaagatataatcatca 22368681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 22443294 - 22443511
Alignment:
Q  7 ttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatctttttcagtatttgtatctt---ttatttcactcattcggga 103  Q
    |||||| ||||||||||||||  ||||| ||||||||| |||| ||||||||||||||||||||| |   || |||||   ||||||| || ||||| ||    
T  22443294 ttgttggagaactacttgatggcttatcggaagaagatcggatttggaagccatgatctttttcact---tgaatcttgttttatttctctaattcgaga 22443390  T
Q  104 tttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttgatcaagtcaactccagcagcacatcctggatctgaagattgttggtcc 203  Q
     ||||||| |||||||||    ||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||  |||| |||||||| || ||     
T  22443391 attgatgttctgaatcttaactgctatttggagacgaagaatcttagttttgatcaagtcaagaccagcagcacatccaagatcagaagattgatgttct 22443490  T
Q  204 tcaaggaagatataatcatca 224  Q
    |||||||||||||||||||||    
T  22443491 tcaaggaagatataatcatca 22443511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 22437186 - 22437406
Alignment:
Q  4 tgtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatctttttcagtatttgtatcttttatttcactcattcggga 103  Q
    |||||| |||||||||||||||||||||||||||||||||||||| | ||||| | |||||||||||| |   |||||||||||||||||||||||||||    
T  22437186 tgtttggtgcagaactacttgatgctttatccgaagaagattggagacggaaggcttgatctttttcact---tgtatcttttatttcactcattcggga 22437282  T
Q  104 tttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttgatcaagt---caactccagcagcacatcctggatctgaagattgttgg 200  Q
    |||||||| ||||||| |||| ||||||||||||||  ||  |||||||||||   |||      | ||||| |||||||| ||||| | || ||||||     
T  22437283 tttgatgttctgaatcgtgtaggctatttggagacggtgagccatagttttgacacagtttgtggcaccagcggcacatccaggatcaggagcttgttgt 22437382  T
Q  201 tcctcaaggaagatataatcatca 224  Q
    |||||| |||||||||||||||||    
T  22437383 tcctcatggaagatataatcatca 22437406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 156
Target Start/End: Original strand, 22459033 - 22459181
Alignment:
Q  5 gtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatctttttcagtatttgtatcttttatttcactcattcgggat 104  Q
    ||||||||||| ||| |||||  |||  ||| |||| ||||||||||| |||| ||| |||||| || |   |||||| || |||||||| ||| |||||    
T  22459033 gtttgttgcagtactgcttgacccttgttccaaagatgattggatatgcaagctatgttcttttccact---tgtatcattcatttcactaatttgggat 22459129  T
Q  105 ttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttga 156  Q
    ||||| | |||||||||||| ||||||||| |||||||||| ||||||||||    
T  22459130 ttgattttctgaatcttgtatgctatttggcgacgaagaattatagttttga 22459181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 156
Target Start/End: Original strand, 22482014 - 22482162
Alignment:
Q  5 gtttgttgcagaactacttgatgctttatccgaagaagattggatatggaagccatgatctttttcagtatttgtatcttttatttcactcattcgggat 104  Q
    ||||||||||| ||| |||||  |||  ||| |||| ||||||||||| |||| ||| |||||| || |   |||||| || |||||||| ||| |||||    
T  22482014 gtttgttgcagtactgcttgacccttgttccaaagatgattggatatgcaagctatgttcttttccact---tgtatcattcatttcactaatttgggat 22482110  T
Q  105 ttgatgtcctgaatcttgtaagctatttggagacgaagaatcatagttttga 156  Q
    ||||| | |||||||||||| ||||||||| |||||||||| ||||||||||    
T  22482111 ttgattttctgaatcttgtatgctatttggcgacgaagaattatagttttga 22482162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22630988 - 22631029
Alignment:
Q  1 ttctgtttgttgcagaactacttgatgctttatccgaagaag 42  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  22630988 ttctgtttgttgcagaactacttgatggtttatccgaagaag 22631029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 22207833 - 22207785
Alignment:
Q  108 atgtcctgaatcttgtaagctatttggagacgaagaatcatagttttga 156  Q
    |||||||||||||||||||||||||| |||||||||||| | |||||||    
T  22207833 atgtcctgaatcttgtaagctatttgtagacgaagaatcctggttttga 22207785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University