View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_low_34 (Length: 239)
Name: NF5335_low_34
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 1411032 - 1411094
Alignment:
| Q |
136 |
gtatcatagagggatcttttactttttaaggatat---aaagtaggcatgttctatggtgatg |
195 |
Q |
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| T |
1411032 |
gtatcatagagggatcttttactttttaaggatataaaaaagtaggcatgttctatggtgatg |
1411094 |
T |
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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 1410930 - 1410977
Alignment:
| Q |
34 |
acaacatttggattaaaagtacaagtctgggtgtaattagtactgaac |
81 |
Q |
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| T |
1410930 |
acaacatttggattaaaagtacaagtctgggtgtaattagtactgaac |
1410977 |
T |
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