View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5335_low_35 (Length: 239)
Name: NF5335_low_35
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_35 |
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| [»] scaffold1444 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 17004397 - 17004237
Alignment:
| Q |
76 |
acacctcttgtatcatggtggcagacagttagtgccttagctttggttccatctaaagccaccaatggaaccatgtaagttgtagttgcatttacttggt |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
17004397 |
acacctcttgtatcatggtggcagacagttagtgccttagctttggttccatctaaagccaccaatggcaccatgtaagttgtagttgcattaacttggt |
17004298 |
T |
|
| Q |
176 |
gacaataaaatacaacatttttgaaatttaatctatgacacatcaccactttgtctccaat |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17004297 |
gacaataaaatacaacatttttgaaatttaatctatgacacatcaccactttgtctccaat |
17004237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 17107654 - 17107419
Alignment:
| Q |
1 |
ttgttaccaacaaaatggcaaatagggactgttccaggcttgactttgagaatttcatagagcacatcaggatccacacctcttgtatcatggtggcaga |
100 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||| || |||||||||| || ||||||||||||||||| || | |
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|
| T |
17107654 |
ttgttgccaacaaaatggcaaatagggatggttccaggcttgactttgagaagttcataaagaacatcaggattcattcctcttgtatcatggtgacaaa |
17107555 |
T |
|
| Q |
101 |
cagttagtgccttagctttggttccatctaaagccaccaatggaaccatgtaagttgtagttgcatttacttggtgacaataaaatacaacatttttgaa |
200 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| | ||||||||| ||| |||||||| |||||||| ||||||||||| | | |||||| |
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|
| T |
17107554 |
tagttagtgccttagctttagttccatcagaagccaccaatagcaccatgtaaactgttgttgcattaacttggtggcaataaaataccatgtctttgaa |
17107455 |
T |
|
| Q |
201 |
atttaatctatgacacatcaccactttgtctccaat |
236 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||| |
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| T |
17107454 |
attcaatctatgacacatcactgctttgtctccaat |
17107419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 17956262 - 17956482
Alignment:
| Q |
1 |
ttgttaccaacaaaatggcaaatagggactgttccaggcttgactttgagaatttcatagagcacatcaggatccacacctcttgtatcatggtggcaga |
100 |
Q |
| |
|
||||| |||| ||||||||||| |||||| ||||||||||| |||||||||| || || ||||||| |||||||| ||||| ||||||||||| |||| |
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|
| T |
17956262 |
ttgttgccaataaaatggcaaacagggacagttccaggcttaactttgagaacatcgtaaagcacattaggatccatacctcgagtatcatggtgacaga |
17956361 |
T |
|
| Q |
101 |
cagttagtgccttagctttggttccatctaaagccaccaatggaaccatgtaagttgtagttgcatttacttggtgacaataaaatacaacatttttgaa |
200 |
Q |
| |
|
||||||||||||| |||||||||||| | |||||||||||||||||||||||||| || ||||| |||||||| ||||| |||| ||| ||||| || |
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|
| T |
17956362 |
ttgttagtgccttagatttggttccatcggatgccaccaatggaaccatgtaagttgttgtcgcattgacttggtggcaatagaatagaacttttttaaa |
17956461 |
T |
|
| Q |
201 |
atttaatctatgacacatcac |
221 |
Q |
| |
|
||| |||||||| |||||||| |
|
|
| T |
17956462 |
attcaatctatggcacatcac |
17956482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 17117176 - 17117411
Alignment:
| Q |
1 |
ttgttaccaacaaaatggcaaatagggactgttccaggcttgactttgagaatttcatagagcacatcaggatccacacctcttgtatcatggtggcaga |
100 |
Q |
| |
|
||||| |||| |||||||||||||||||| ||||| |||||||||||||||| | |||||| |||||||| || |||||||||||||||||| || | |
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|
| T |
17117176 |
ttgttgccaataaaatggcaaatagggacagttcctggcttgactttgagaaccttatagagatgatcaggattcatacctcttgtatcatggtgacaaa |
17117275 |
T |
|
| Q |
101 |
cagttagtgccttagctttggttccatctaaagccaccaatggaaccatgtaagttgtagttgcatttacttggtgacaataaaatacaacatttttgaa |
200 |
Q |
| |
|
||| | |||||||||||| |||||||| ||||||||||||| ||||||||| ||| |||||||| |||||||||||| |||||| || ||||||||| |
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|
| T |
17117276 |
tagtcactgccttagctttagttccatcagaagccaccaatggcaccatgtaaactgttgttgcattaacttggtgacaagaaaatataatatttttgaa |
17117375 |
T |
|
| Q |
201 |
atttaatctatgacacatcaccactttgtctccaat |
236 |
Q |
| |
|
||| | || |||||||| |||| | ||||||||||| |
|
|
| T |
17117376 |
attcattcgatgacacaacaccgcgttgtctccaat |
17117411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 17945276 - 17945484
Alignment:
| Q |
13 |
aaatggcaaatagggactgttccaggcttgactttgagaatttcatagagcacatcaggatccacacctcttgtatcatggtggcagacagttagtgcct |
112 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||| ||||| ||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17945276 |
aaatggcaaacagggacagttccaggcttgacttggagaacttcatagagcatattaggatccatacctcttgtatcatggtggcagatagttagtgcct |
17945375 |
T |
|
| Q |
113 |
tagctttggttccatctaaagccaccaatggaaccatgtaagttgtagttgcatttacttggtgacaataaaatacaacatttttgaaatttaatctatg |
212 |
Q |
| |
|
| | ||| |||||||| | ||||||||||||||||||||||| || || || || | ||||| ||||| ||| |||| ||||| | ||| | |||||| |
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|
| T |
17945376 |
tggatttagttccatcagaggccaccaatggaaccatgtaagtcgttgtcgcgttgatctggtggcaatagaatccaacctttttaagattcattctatg |
17945475 |
T |
|
| Q |
213 |
acacatcac |
221 |
Q |
| |
|
||||||||| |
|
|
| T |
17945476 |
acacatcac |
17945484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 17986432 - 17986659
Alignment:
| Q |
9 |
aacaaaatggcaaatagggactgttccaggcttgactttgagaatttcatagagcacatcaggatccacacctcttgtatcatggtggcagacagttagt |
108 |
Q |
| |
|
||||||||| || || || | ||||||||||||||||||||||| |||||| |||||||||||||||| |||||| || ||||||||||| | |||||| |
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|
| T |
17986432 |
aacaaaatgacatattggaattgttccaggcttgactttgagaacttcataaagcacatcaggatccatacctctcgtgtcatggtggcatattgttagt |
17986531 |
T |
|
| Q |
109 |
gccttagctttggttccatctaaagccaccaatggaaccatgtaagttgtagttgcatttacttggtgacaataaaatacaacatttttgaaatttaatc |
208 |
Q |
| |
|
||||| ||||| |||||||| | ||||| || ||||| ||||| |||| |||||||| |||||||| |||||||||||||| | | |||||||| | |
|
|
| T |
17986532 |
gccttcgctttagttccatcagaggccactaaaggaactatgtatgttgatgttgcattgacttggtggcaataaaatacaacttgatcgaaatttagtt |
17986631 |
T |
|
| Q |
209 |
tatgacacatcaccactttgtctccaat |
236 |
Q |
| |
|
||||||||||||| ||||||||||||| |
|
|
| T |
17986632 |
tatgacacatcacggctttgtctccaat |
17986659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 17999211 - 17999446
Alignment:
| Q |
1 |
ttgttaccaacaaaatggcaaatagggactgttccaggcttgactttgagaatttcatagagcacatcaggatccacacctcttgtatcatggtggcaga |
100 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||| |||||||||||||||| ||||| ||||| || |||| || ||||||||| |||||||| || |
|
|
| T |
17999211 |
ttgttaccaacaaaatggcagacagggatagttcctggcttgactttgagaacttcatcgagcaaattcggattcatacctcttgtgtcatggtgacaag |
17999310 |
T |
|
| Q |
101 |
cagttagtgccttagctttggttccatctaaagccaccaatggaaccatgtaagttgtagttgcatttacttggtgacaataaaatacaacatttttgaa |
200 |
Q |
| |
|
||| | ||| ||| |||| ||||||| | |||| ||| || |||||||||||||| | |||||| ||||||||||||||||||||||| || | ||| |
|
|
| T |
17999311 |
cagccaatgcattaactttacttccatcagaggccaacaaagggaccatgtaagttgttgatgcattcacttggtgacaataaaatacaactttctcgaa |
17999410 |
T |
|
| Q |
201 |
atttaatctatgacacatcaccactttgtctccaat |
236 |
Q |
| |
|
||| | || ||||||||| || |||||||| |||| |
|
|
| T |
17999411 |
attcattcgatgacacattactcctttgtctgcaat |
17999446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1444 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold1444
Description:
Target: scaffold1444; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 75 - 1
Alignment:
| Q |
1 |
ttgttaccaacaaaatggcaaatagggactgttccaggcttgactttgagaatttcatagagcacatcaggatcc |
75 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
75 |
ttgttaccaacaaaatggcaaatagggacagttccaggcttgactttgagaatttcgtagagcacatcaggatcc |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 17258034 - 17258256
Alignment:
| Q |
13 |
aaatggcaaatagggactgttccaggcttgactttgagaatttcatagagcacatcaggatccacacctcttgtatcatggtggcagacagttagtgcct |
112 |
Q |
| |
|
||||||||||| |||| || ||||| | |||||| ||| |||||| |||| |||| || || |||||||| ||||||||||| ||||||| |||| |
|
|
| T |
17258034 |
aaatggcaaattgggatggtaccaggttcgacttttagagcttcataaagcaactcagcattcatgcctcttgtgtcatggtggcaaacagttaaggcct |
17258133 |
T |
|
| Q |
113 |
tagctttggttccatctaaagccaccaatggaaccatgtaagttgtagttgcatttacttggtgacaataaaatacaacatttttgaaatttaatctatg |
212 |
Q |
| |
|
||||||| |||||| || ||||||| |||| |||| || ||||| | |||||||| |||| |||||||| |||| |||||| |||||||| |
|
|
| T |
17258134 |
tagctttacctccatcgggggctaccaatgataccacataagcagttgttgcttgcacttggtggcaattgaatacaactttttcgaaattcaatctatg |
17258233 |
T |
|
| Q |
213 |
acacatcaccactttgtctccaa |
235 |
Q |
| |
|
||||||||| | |||||||||| |
|
|
| T |
17258234 |
acacatcactgcattgtctccaa |
17258256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 235
Target Start/End: Complemental strand, 34241526 - 34241423
Alignment:
| Q |
132 |
agccaccaatggaaccatgtaagttgtagttgcatttacttggtgacaataaaatacaacatttttgaaattt-aatctatgacacatcaccactttgtc |
230 |
Q |
| |
|
|||||||||||||||| | ||| ||| ||| ||| |||| ||||||||||||||||| ||||||||| || || |||||||||||||| ||||||| |
|
|
| T |
34241526 |
agccaccaatggaaccttaaaagctgttgttccatgaacttcatgacaataaaatacaac-tttttgaaagttcaacctatgacacatcactgctttgtc |
34241428 |
T |
|
| Q |
231 |
tccaa |
235 |
Q |
| |
|
||||| |
|
|
| T |
34241427 |
tccaa |
34241423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 34315650 - 34315590
Alignment:
| Q |
175 |
tgacaataaaatacaacatttttgaaatttaatctatgacacatcaccactttgtctccaa |
235 |
Q |
| |
|
||||||||| ||||||| |||| |||||| || || |||||||||||| |||| ||||||| |
|
|
| T |
34315650 |
tgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaa |
34315590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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