View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_low_37 (Length: 237)
Name: NF5335_low_37
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5119560 - 5119781
Alignment:
| Q |
1 |
atggggttcaaaaacccaaatnnnnnnntggggtgaaggtaaaattctctatagaaatctctataccgttcttcatgaatgggataatcttattggtttt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5119560 |
atggggttcaaaaacccaaataaaaaaatggggtgaaggtaaaattctctatagaaatctctatactgttcttcatgaatgggataatcttattggtttt |
5119659 |
T |
|
| Q |
101 |
tggaggagaagtggtcctggtagtgctgtgattgaatcaccttcattggttttctttgaatggggttcatcgtttattgctggctctagggtttcaccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5119660 |
tggaggagaagtggtcctggtagtgctgtgattgaatcaccttcattggttttctttgaatggggttcatcgtttattgctggctctagggtttcaccaa |
5119759 |
T |
|
| Q |
201 |
cccaatcagaatctgaaatttg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
5119760 |
cccaatcagaatctgaaatttg |
5119781 |
T |
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