View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5335_low_38 (Length: 237)
Name: NF5335_low_38
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38792658 - 38792881
Alignment:
| Q |
1 |
ctgctcctgctaaaatatttacataaaaaacat-aatgcttagtatgcaatgtaatatcaggtacattttaaaataaaagtatgagatcatctataatac |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38792658 |
ctgctcctgctaaaatatttacataaaaaacatgaatgcttagtatgcaatgtaatatcaggtacattttaaaataaaagtatgagatcatctataatac |
38792757 |
T |
|
| Q |
100 |
aaattatcaaagagaaatagataaagcaatgaatcttatatccgcaccagatttaccaaactagtatattctttgtgtacttgaatgctttcttgcgtgt |
199 |
Q |
| |
|
|||||||||||||||||||| ||| |||| ||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
38792758 |
gaattatcaaagagaaatagacaaaacaataaatcttatatctgcaccaaatttaccaaactagtatattctttgtttacttgaatgctttcttgcgtgc |
38792857 |
T |
|
| Q |
200 |
caattccatcaccaagttaaagat |
223 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
38792858 |
caattccatcaccaagttagagat |
38792881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 408293 - 408510
Alignment:
| Q |
1 |
ctgctcctgctaaaatatttacataaaaaacata-atgcttagtatgcaatgtaatatcaggtacattttaaaataaaagtatgagatcatctataatac |
99 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |
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|
| T |
408293 |
ctgctcctgctaaaatatttacatagaaaacatggattcttagtatgcaatgtaatatcaggtgcattttaaaataaaagtatggaatcatctagaatat |
408392 |
T |
|
| Q |
100 |
aaattatcaaagagaaatagataaagcaatgaatcttatatccgcaccagatttaccaaactagtatattctttgtgtacttgaatgctttcttgcgtgt |
199 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||||||||| ||||| ||||||| ||||| ||||||||||| |||||||||||| ||||| ||| |
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|
| T |
408393 |
gaattatcaaatagaaatagatagagcaacgaatcttatatctgcacctgatttacttgactagaatattctttgtttacttgaatgctctcttgtgtgc |
408492 |
T |
|
| Q |
200 |
caattccatcaccaagtt |
217 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
408493 |
caattccatcaccaagtt |
408510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 415649 - 415432
Alignment:
| Q |
1 |
ctgctcctgctaaaatatttacataaaaaacata-atgcttagtatgcaatgtaatatcaggtacattttaaaataaaagtatgagatcatctataatac |
99 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |
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|
| T |
415649 |
ctgctcctgctaaaatatttacatagaaaacatggatgcttagtatgcaatgtaatatcaggtgcattttaaaataaaagtatggaatcatctagaatat |
415550 |
T |
|
| Q |
100 |
aaattatcaaagagaaatagataaagcaatgaatcttatatccgcaccagatttaccaaactagtatattctttgtgtacttgaatgctttcttgcgtgt |
199 |
Q |
| |
|
|||||||||| ||||||||||| | ||| |||||||||||| ||||| ||||||| ||||| ||||||||||| |||||||||||| ||||| ||| |
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|
| T |
415549 |
gaattatcaaatagaaatagatagaacaacgaatcttatatctgcacctgatttacttgactagaatattctttgtttacttgaatgctctcttgtgtgc |
415450 |
T |
|
| Q |
200 |
caattccatcaccaagtt |
217 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
415449 |
caattccatcaccaagtt |
415432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 49962099 - 49962010
Alignment:
| Q |
128 |
atgaatcttatatccgcaccagatttaccaaactagtatattctttgtgtacttgaatgctttcttgcgtgtcaattccatcaccaagtt |
217 |
Q |
| |
|
||||||||||||| ||||| ||||| | |||||||||| |||||| |||||||||||| ||||| || |||||| ||||||||||| |
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|
| T |
49962099 |
atgaatcttatatttgcacctgatttgcatgactagtatatgctttgtttacttgaatgctctcttgtgttccaattctatcaccaagtt |
49962010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 24184775 - 24184992
Alignment:
| Q |
1 |
ctgctcctgctaaaatatttacataaaaaacata-atgcttagtatgcaatgtaatatcaggtacattttaaaataaaagtatgagatcatctataatac |
99 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
24184775 |
ctgctcctgctaaaatatttacatagaaaacatggatgcttagtatgcaatgtaatatcaggtgcattttaaaataaaagtatggaatcatctagaatat |
24184874 |
T |
|
| Q |
100 |
aaattatcaaagagaaatagataaagcaatgaatcttatatccgcaccagatttaccaaactagtatattctttgtgtacttgaatgctttcttgcgtgt |
199 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||||||||| ||||| ||||||| ||||| ||||||||||| |||||||||||| ||||| ||| |
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|
| T |
24184875 |
gaattatcaaatagaaatagatagagcaacgaatcttatatctgcacctgatttactcgactagaatattctttgtttacttgaatgctctcttgtgtgc |
24184974 |
T |
|
| Q |
200 |
caattccatcaccaagtt |
217 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24184975 |
caattccatcaccaagtt |
24184992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 20787210 - 20787266
Alignment:
| Q |
161 |
tagtatattctttgtgtacttgaatgctttcttgcgtgtcaattccatcaccaagtt |
217 |
Q |
| |
|
|||||||| |||||| |||||||||||| ||||| ||| |||||| ||||||||||| |
|
|
| T |
20787210 |
tagtatatgctttgtttacttgaatgctctcttgtgtgccaattctatcaccaagtt |
20787266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 24357504 - 24357287
Alignment:
| Q |
1 |
ctgctcctgctaaaatatttacataaaaaacata-atgcttagtatgcaatgtaatatcaggtacattttaaaataaaagtatgagatcatctataatac |
99 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
24357504 |
ctgctcctgctaaaatatttacatagaaaacatggatgcttagtatgcaatgtaatatcaggtgcattttaaaataaaagtatggaatcatctagaatat |
24357405 |
T |
|
| Q |
100 |
aaattatcaaagagaaatagataaagcaatgaatcttatatccgcaccagatttaccaaactagtatattctttgtgtacttgaatgctttcttgcgtgt |
199 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||||||||| ||||| ||||||| ||||| ||||||||||| |||||||||||| ||||| ||| |
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|
| T |
24357404 |
gaattatcaaatagaaatagatagagcaacgaatcttatatctgcacctgatttacttgactagaatattctttgtttacttgaatgctctcttgtgtgc |
24357305 |
T |
|
| Q |
200 |
caattccatcaccaagtt |
217 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24357304 |
caattccatcaccaagtt |
24357287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 24345126 - 24344909
Alignment:
| Q |
1 |
ctgctcctgctaaaatatttacataaaaaacata-atgcttagtatgcaatgtaatatcaggtacattttaaaataaaagtatgagatcatctataatac |
99 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
24345126 |
ctgctcctgctaaaatatttacatagaaaacatggatgcttagtatgcaatgtaatatcaagtacattttaaaataaaagtatggaatcatctagaatat |
24345027 |
T |
|
| Q |
100 |
aaattatcaaagagaaatagataaagcaatgaatcttatatccgcaccagatttaccaaactagtatattctttgtgtacttgaatgctttcttgcgtgt |
199 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||| ||||| ||||||| ||||| ||||||||||| |||||||||||| ||||| ||| |
|
|
| T |
24345026 |
gaattatcaaatagaaatagatagaacaacaaatcttatatctgcacctgatttacttgactagaatattctttgtttacttgaatgctctcttgtgtgc |
24344927 |
T |
|
| Q |
200 |
caattccatcaccaagtt |
217 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
24344926 |
caattccatctccaagtt |
24344909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 15047761 - 15047817
Alignment:
| Q |
161 |
tagtatattctttgtgtacttgaatgctttcttgcgtgtcaattccatcaccaagtt |
217 |
Q |
| |
|
|||||||| |||||| |||||||||||| ||||| ||| |||||| ||||||||||| |
|
|
| T |
15047761 |
tagtatatgctttgtttacttgaatgctctcttgtgtgccaattctatcaccaagtt |
15047817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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