View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_low_39 (Length: 235)
Name: NF5335_low_39
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 53902980 - 53903213
Alignment:
| Q |
1 |
atccttctcatccgccagaccaataataatcgacgacggccccaacgacattctctccctccaaagccgccgttacgacttcactcccctcctcaacttc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53902980 |
atccttctcatccgccagaccaataataatcgacgacggccccaacgacattctctccctccaaagccgccgttacgacttcactcccctcctcaacttc |
53903079 |
T |
|
| Q |
101 |
ctctccaccgattccaccacca---ccgccgccaccacaaactccctctctccaaccgaatttcaactcgccgaatcctaccgcgccgtaccagctccac |
197 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53903080 |
ctctccaccgattccaccaccaccgccgccgccaccacaaactccctctctccaaccgaatttcaactcgccgaatcctaccgcgccgtaccagctccac |
53903179 |
T |
|
| Q |
198 |
tctggcacgcgcttctcaaatctctctgctcctc |
231 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
53903180 |
tctggcacgcgcttctcaaatctctctgctcctc |
53903213 |
T |
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