View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_low_4 (Length: 456)
Name: NF5335_low_4
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 14 - 449
Target Start/End: Complemental strand, 3674394 - 3673956
Alignment:
| Q |
14 |
gttttatgctgctcctggccgaactctagattatcagggttgttttcgctgataatttgagggttaagaagaagaannnnnnnnnn-aatctaattaacc |
112 |
Q |
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| T |
3674394 |
gttttatgctgctcctggccgaactctagattatcaggattgttttcgctgataattttagggttaagacgaagaaaaaaaaatttgaatctaattaacc |
3674295 |
T |
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| Q |
113 |
cttgcccgattgattatata--ggtcacctcacaacaaagagtgatgtgtatagctatggagtggttctattagaattgctcacaggaagaagggtagtg |
210 |
Q |
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| T |
3674294 |
cttgcccgattgattatatataggtcacctcacaacaaagagtgatgtgtatagctatggagtggttctattagaattgctcacaggaagaagggtagtg |
3674195 |
T |
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| Q |
211 |
gataagtcttcagaatcaagtagagggaaaaacttggtggaatgggcaagaccaatgttgagagatcaaaagaagctgcaccgtattatcgaccgtagac |
310 |
Q |
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| T |
3674194 |
gataagtcttcagaatcaagtagagggaaaaacttggtggaatgggcaagaccaatgttgagagatcaaaagaagctgcaccgtattatcgaccgtagac |
3674095 |
T |
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| Q |
311 |
ttgaaggtcaatatcctaccaaaggagcattgaaagttgctatgttagcttttaaatgtttgagtcatcacccaaatccaagacccttcatgagtgatgt |
410 |
Q |
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| T |
3674094 |
ttgaaggtcaatatcctaccaaaggagctttgaaagttgctatgttagcttttaaatgtttgagtcatcacccaaatccaagacccttcatgagtgatgt |
3673995 |
T |
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| Q |
411 |
tgttaaggttttggaaccacttcaagattttgatgatgt |
449 |
Q |
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| T |
3673994 |
tgttaaggttttggaaccacttcaagattttgatgatgt |
3673956 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 48554300 - 48554367
Alignment:
| Q |
148 |
aagagtgatgtgtatagctatggagtggttctattagaattgctcacaggaagaagggtagtggataa |
215 |
Q |
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| T |
48554300 |
aagagtgatgtgtatagctatggagtagtgttgttggaattgcttacaggaaagagggtagtggataa |
48554367 |
T |
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