View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_low_42 (Length: 220)
Name: NF5335_low_42
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_42 |
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| [»] chr4 (12 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 5886729 - 5886510
Alignment:
| Q |
1 |
catcattctcaataattgatatgttgttgtatgaaaggtgtaaactatgtaaatttctaagcttcaaaagctcatcttgctgaagcaatccattcaactt |
100 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5886729 |
catcattctcaatgattgatatgttgttgtatgaaaggtgtaaactatgtaaatttctaagcttcaaaagctcatcttgctgaagcaatccattcaactt |
5886630 |
T |
|
| Q |
101 |
gttagaggaaagactgaggacagaaagtgaattgagctggaagatagatgttggaaaaggccctgatatattattgctacttaaatcaaggaattccaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5886629 |
gttagaggaaagactgaggacagaaagtgaattgagctggaagatagatgttggaaaaggccctgatatattattgctacttaaatcaaggaactccaac |
5886530 |
T |
|
| Q |
201 |
acagaggaagacacatttat |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
5886529 |
acagaggaagacacatttat |
5886510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 5895574 - 5895355
Alignment:
| Q |
1 |
catcattctcaataattgatatgttgttgtatgaaaggtgtaaactatgtaaatttctaagcttcaaaagctcatcttgctgaagcaatccattcaactt |
100 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| || | |||||| ||||||||||||||||||||| | || || | ||||||||| | |
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| T |
5895574 |
catcattctcatttattgatatgttgttgtatgaaaggtctagtcctaataaattactaagcttcaaaagctcatctagttgtagtgacccattcaacct |
5895475 |
T |
|
| Q |
101 |
gttagaggaaagactgaggacagaaagtgaattgagctggaagatagatgttggaaaaggccctgatatattattgctacttaaatcaaggaattccaac |
200 |
Q |
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|||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
5895474 |
attagaggaaagatagaggaaagaaagtgaacggagctggaagatagatgttggaaaaggccctgatagattattgctacttaaatcaaggaattccatc |
5895375 |
T |
|
| Q |
201 |
acagaggaagacacatttat |
220 |
Q |
| |
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||| ||||||||||||||| |
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| T |
5895374 |
acattggaagacacatttat |
5895355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 5539775 - 5539570
Alignment:
| Q |
15 |
attgatatgttgttgtatgaaaggtgtaaactatgtaaatttctaagcttcaaaagctcatcttgctgaagcaatccattcaacttgttagaggaaagac |
114 |
Q |
| |
|
||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||| |||||||| |
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| T |
5539775 |
attgatatgttgttgtatgaaaggtctagtgcagttaaatttcttagcttcaaaagctcatctaactgcagcaatccattcaacctgttaaaggaaagat |
5539676 |
T |
|
| Q |
115 |
tgaggacagaaagtgaattgagctggaagatagatgttggaaaaggccctgatatattattgctacttaaatcaaggaattccaacacagaggaagacac |
214 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| | | |||||||||||||| |
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| T |
5539675 |
cgaggacagaaagtgaacgaagctggaagatagatgttggaaaagaccctgatagattattgctacttaaatcaagggtgttaattacagaggaagacac |
5539576 |
T |
|
| Q |
215 |
atttat |
220 |
Q |
| |
|
|||||| |
|
|
| T |
5539575 |
atttat |
5539570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 5848510 - 5848291
Alignment:
| Q |
1 |
catcattctcaataattgatatgttgttgtatgaaaggtgtaaactatgtaaatttctaagcttcaaaagctcatcttgctgaagcaatccattcaactt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| || | |||||||||||||| ||||||||||||| |||| | | ||||||||| | |
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|
| T |
5848510 |
catcattctcaatgattgatatgttgttgtatgaaagggttaggtcagttaaatttctaagctccaaaagctcatctagctgcattgacccattcaacct |
5848411 |
T |
|
| Q |
101 |
gttagaggaaagactgaggacagaaagtgaattgagctggaagatagatgttggaaaaggccctgatatattattgctacttaaatcaaggaattccaac |
200 |
Q |
| |
|
||||| |||||| ||||| | |||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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|
| T |
5848410 |
attagatgaaagatcgaggaaaaaaagtgaacggaactggaagagagatgttggaaaaggccctgatagattattgctacttaaatcaaggaattccatc |
5848311 |
T |
|
| Q |
201 |
acagaggaagacacatttat |
220 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
5848310 |
acattggaagacacatttat |
5848291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 5613282 - 5613468
Alignment:
| Q |
1 |
catcattctcaataattgatatgttgttgtatgaaaggtgtaaactatgtaaatttctaagcttcaaaagctcatcttgctgaagcaatccattcaactt |
100 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||| || | |||||| ||||||||||||||||||||| | || || | ||||||||| | |
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|
| T |
5613282 |
catcattctcatttattgatatgttgttgtatgaaaggtctagtcctaataaattactaagcttcaaaagctcatctagttgtagtgacccattcaacct |
5613381 |
T |
|
| Q |
101 |
gttagaggaaagactgaggacagaaagtgaattgagctggaagatagatgttggaaaaggccctgatatattattgctacttaaatc |
187 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
5613382 |
attagaggaaagatggaggatagaaagtgaacggagttggaagatagatgttggaaaaggccctgatagattattgctacgtaaatc |
5613468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 5571638 - 5571462
Alignment:
| Q |
15 |
attgatatgttgttgtatgaaaggtgtaaactatgtaaatttctaagcttcaaaagctcatcttgctgaagcaatccattcaacttgttagaggaaagac |
114 |
Q |
| |
|
||||||||||||||||||||||||| || | |||| | || |||| ||||||||||||| |||| | | | ||||||||| ||||| ||||||| |
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|
| T |
5571638 |
attgatatgttgttgtatgaaaggtctagggcagttaaactacttagctccaaaagctcatctagctgcacccaaccattcaacctgttaatggaaagat |
5571539 |
T |
|
| Q |
115 |
tgaggacagaaagtgaattgagctggaagatagatgttggaaaaggccctgatatattattgctacttaaatcaagg |
191 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5571538 |
cgaggacataaagtgatctgaactggaagatagatgttggaaaaggccctgatagattattgctacttaaatcaagg |
5571462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 5558701 - 5558906
Alignment:
| Q |
15 |
attgatatgttgttgtatgaaaggtgtaaactatgtaaatttctaagcttcaaaagctcatcttgctgaagcaatccattcaacttgttagaggaaagac |
114 |
Q |
| |
|
|||||||||||||| |||||||||| || | |||||||||||||| |||||| | |||| | || || | ||||||||| |||||||||||||| |
|
|
| T |
5558701 |
attgatatgttgttatatgaaaggtttagtgcagttaaatttctaagctccaaaagtttatctagatgcagtgacccattcaacctgttagaggaaagat |
5558800 |
T |
|
| Q |
115 |
tgaggacagaaagtgaattgagctggaagatagatgttggaaaaggccctgatatattattgctacttaaatcaaggaattccaacacagaggaagacac |
214 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||| || ||||| || |||||| ||||||||||||||| | | |||||||||||||| |
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|
| T |
5558801 |
cgaggacagaaagtgaacgaagcaggaagatagatgttggaacagaccctgctagattatttctacttaaatcaagggtgttaattacagaggaagacac |
5558900 |
T |
|
| Q |
215 |
atttat |
220 |
Q |
| |
|
|||||| |
|
|
| T |
5558901 |
atttat |
5558906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 5583843 - 5583640
Alignment:
| Q |
17 |
tgatatgttgttgtatgaaaggtgtaaactatgtaaatttctaagcttcaaaagctcatcttgctgaagcaatccattcaacttgttagaggaaagactg |
116 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| |||||||| || |||||||||| |||| ||| | ||||||||| ||||| |||||||| | |
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|
| T |
5583843 |
tgatatgttgttgtatgaaaggtctagtgtagataaatctctaagctccataagctcatctagctgcagcgacccattcaacctgttaaaggaaagatcg |
5583744 |
T |
|
| Q |
117 |
aggacagaaagtgaattgagctggaagatagatgttggaaaaggccctgatatattattgctacttaaatcaaggaattccaacacagaggaagacacat |
216 |
Q |
| |
|
||||||||||| |||| ||| | |||||||| ||||||| |||||||||| || |||| | |||||||||||| || | ||||||| |||||||| |
|
|
| T |
5583743 |
aggacagaaagcgaatggagtttaaagatagacattggaaatggccctgatagatcattgttgcttaaatcaagggttttgagtacagaggtagacacat |
5583644 |
T |
|
| Q |
217 |
ttat |
220 |
Q |
| |
|
|||| |
|
|
| T |
5583643 |
ttat |
5583640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 3748715 - 3748833
Alignment:
| Q |
50 |
taaatttctaagcttcaaaagctcatcttgctgaagcaatccattcaacttgttagaggaaagactgaggacagaaagtgaattgagctggaagatagat |
149 |
Q |
| |
|
||||||| | ||||| |||||||| ||| |||| ||| ||||| | | |||||||| ||||||| ||||||||||||||| |||||||| |||| |||| |
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|
| T |
3748715 |
taaatttttgagctttaaaagctcgtctagctgcagcgatccagtgatcttgttagtggaaagatcgaggacagaaagtgacttgagctgcaagacagat |
3748814 |
T |
|
| Q |
150 |
gttggaaaaggccctgata |
168 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
3748815 |
attggaaaaggtcctgata |
3748833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 209
Target Start/End: Complemental strand, 5853440 - 5853327
Alignment:
| Q |
96 |
aacttgttagaggaaagactgaggacagaaagtgaattgagctggaagatagatgttggaaaaggccctgatatattattgctacttaaatcaaggaatt |
195 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||| ||||| || |||||| |||||||||||||||||| || |||||| |||||||||||| ||| |
|
|
| T |
5853440 |
aacttgttagaggaaagatcaaggcgataaagtgaaccaagctgcaatatagattttggaaaaggccctgatagatcattgcttcttaaatcaagggatt |
5853341 |
T |
|
| Q |
196 |
ccaacacagaggaa |
209 |
Q |
| |
|
| || || |||||| |
|
|
| T |
5853340 |
ctaatacggaggaa |
5853327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 5564612 - 5564667
Alignment:
| Q |
135 |
agctggaagatagatgttggaaaaggccctgatatattattgctacttaaatcaag |
190 |
Q |
| |
|
||||| |||||||||||||||||||| || |||| || |||||| ||||||||||| |
|
|
| T |
5564612 |
agctgaaagatagatgttggaaaaggaccagatagatgattgctgcttaaatcaag |
5564667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 5553023 - 5553099
Alignment:
| Q |
135 |
agctggaagatagatgttggaaaaggccctgatatattattgctacttaaatcaaggaattccaacacagaggaaga |
211 |
Q |
| |
|
||||| || |||||| ||||||||||||||||| || |||||| ||||| |||||| |||| || | ||||||||| |
|
|
| T |
5553023 |
agctgcaatatagattttggaaaaggccctgattgatcattgcttcttaattcaagggattctaatatagaggaaga |
5553099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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