View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5335_low_43 (Length: 210)
Name: NF5335_low_43
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 55958610 - 55958430
Alignment:
| Q |
13 |
gaaataccaataaagactaatgtgttagtaaatgcttgggcaatgggaagagatcccaaatattggtatgatgcagagaagtttatacctgagaggtttc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55958610 |
gaaataccaataaagactaatgtgttagtaaatgcttgggcaatgtgaagagatcccaaatattggtatgatgcagagaagtttatacctgagaggtttc |
55958511 |
T |
|
| Q |
113 |
atgacagtaaagattttgattttaataaagtgaatagtaataataataactttgaatacatcccttttggaggaggaagaa |
193 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55958510 |
atgacagtaaatattttgattttaataaagtgaatagtaataataataactttgaatacatcccttttggaggaggaagaa |
55958430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 55955054 - 55954877
Alignment:
| Q |
13 |
gaaataccaataaagactaatgtgttagtaaatgcttgggcaatgggaagagatcccaaatattggtatgatgcagagaagtttatacctgagaggtttc |
112 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
55955054 |
gaaataccaataaagactagcgtgatagtaaatgcatgggcaattggaagagatcccaaacattggtatgatgcaaagaagtttatacctgaaaggttta |
55954955 |
T |
|
| Q |
113 |
atgacagtaaagattttgattttaataaagtgaatagtaataataataactttgaatacatcccttttggaggaggaagaa |
193 |
Q |
| |
|
|||| |||| | |||||||||||||||| |||| |||||||||| |||||| ||||| |||||||| |||||||||| |
|
|
| T |
55954954 |
atgatagtactggttttgattttaataaattgaa---caataataatagctttgattacatgccttttgggggaggaagaa |
55954877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 41795820 - 41795658
Alignment:
| Q |
13 |
gaaataccaataaagactaatgtgttagtaaatgcttgggcaatgggaagagatcccaaatattggtatgatgcagagaagtttatacctgagaggtttc |
112 |
Q |
| |
|
|||||||| |||||||||| |||| |||||||||| |||||||| |||||||||||||||||||| ||||||||||| || ||||||| | ||||||||| |
|
|
| T |
41795820 |
gaaatacctataaagactagtgtgatagtaaatgcatgggcaatcggaagagatcccaaatattgatatgatgcagataattttatacataagaggtttc |
41795721 |
T |
|
| Q |
113 |
atgacagtaaagattttgattttaataaagtgaatagtaataataataactttgaatacatccctt |
178 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41795720 |
aggacagtaaagattttgaatttaataaagtgaatagtaata---ataactttgaatacatccctt |
41795658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 12268304 - 12268478
Alignment:
| Q |
13 |
gaaataccaataaagactaatgtgttagtaaatgcttgggcaatgggaagagatcccaaatattggtatgatgcagagaagtttatacctgagaggtttc |
112 |
Q |
| |
|
|||||||| |||||||||||| | || ||||||| |||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12268304 |
gaaatacctataaagactaatttaatattaaatgcatgggcaattggaagagatcccaatcattggtctgatgcagagaagtttatacctgagaggtttc |
12268403 |
T |
|
| Q |
113 |
atgacagtaaagattttgattttaataaagtgaatagtaataataataactttgaatacatcccttttggaggaggaagaa |
193 |
Q |
| |
|
|||| | || | ||||||||||||||||||| ||| |||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
12268404 |
atgataatactggttttgattttaataaagtg------aatgataatagctttcagtacatcccttttggaggaggaagaa |
12268478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 12425353 - 12425247
Alignment:
| Q |
41 |
taaatgcttgggcaatgggaagagatcccaaatattggtatgatgcagagaagtttatacctgagaggtttcatgacagtaaagattttgattttaataa |
140 |
Q |
| |
|
||||||| |||||||| |||||||||||| || |||||| |||||| |||||||||||||| |||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
12425353 |
taaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtttcatgatagtactggttttgattttaataa |
12425254 |
T |
|
| Q |
141 |
agtgaat |
147 |
Q |
| |
|
||||||| |
|
|
| T |
12425253 |
agtgaat |
12425247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 7141631 - 7141706
Alignment:
| Q |
41 |
taaatgcttgggcaatgggaagagatcccaaatattggtatgatgcagagaagtttatacctgagaggtttcatga |
116 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||| ||||||| |||| |||||| || ||||||||| |||| |
|
|
| T |
7141631 |
taaatgcgtgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatga |
7141706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University