View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_low_6 (Length: 447)
Name: NF5335_low_6
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Original strand, 43504734 - 43505157
Alignment:
| Q |
17 |
aaagactatatacttcaaatctaatgttgcccttatatgttaaaccacaattattacccaaattaacaacatcgaaaataatataaagagtagttttgcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43504734 |
aaagactatatacttcaaatctaatgttgcccttatatgttaaaccacaattattacccaaattaacaacatcgaaaataatataaagagtagttttgcc |
43504833 |
T |
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| Q |
117 |
aaaatttatctgtagaatatcttgttacctgcactgaccgatggaatcaggaagagcactcaacttatttccagacaccgagagaattttcaacttttgt |
216 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43504834 |
taaacttatctgtagaatatcttgttacctgcactgaccgatggaatcaggaagagcactcaacttatttccagacacagagagaattttcaacttttgt |
43504933 |
T |
|
| Q |
217 |
aaaaagccaattgaatctggaagtgacttcaaaatatttgaagagatattaagatcctctagatttagcaatcctgatattgtgtcaggaatcacctatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43504934 |
aaaaagccaattgaatctggaagtgacttcaaaatatttgaagagatattaagatcctctagatttagcaatcctgatattgtgtcaggaatcacctatc |
43505033 |
T |
|
| Q |
317 |
atatccagccaaaataaataaatcaaataagaaatctcctcttggaaatctagttcaaagaatgtaaattacaaagaagaagaaggttagttcataatcc |
416 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43505034 |
atatgcagccaaaataaataaatcaaataagaaatctcctcttggaaatctagttcaaagaatgtaaattacaaagaagaagaaggttagttcataatcc |
43505133 |
T |
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| Q |
417 |
accatttcctaaatttcacctttg |
440 |
Q |
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| T |
43505134 |
accatttcctaaatttcacctttg |
43505157 |
T |
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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 142 - 314
Target Start/End: Original strand, 34565196 - 34565368
Alignment:
| Q |
142 |
tacctgcactgaccgatggaatcaggaagagcactcaacttatttccagacaccgagagaattttcaacttttgtaaaaagccaattgaatctggaagtg |
241 |
Q |
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||||||||||||| |||| ||||||||| ||| | | ||| |||||||| || ||| | |||||||||||||| ||| ||||||||||| || |||| |
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| T |
34565196 |
tacctgcactgacaaatggcatcaggaagggcagtaagcttgtttccagaaacattgagcaatttcaacttttgtagaaatccaattgaatcgggcagtg |
34565295 |
T |
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| Q |
242 |
acttcaaaatatttgaagagatattaagatcctctagatttagcaatcctgatattgtgtcaggaatcaccta |
314 |
Q |
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| | |||| ||||| ||||| |||||| ||||| |||||| ||||||| ||||| ||||||||||||||| |
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| T |
34565296 |
attccaaatgatttgcagagagattaagctcctccagattttgcaatccaactattgagtcaggaatcaccta |
34565368 |
T |
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