View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_low_7 (Length: 414)
Name: NF5335_low_7
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 144 - 397
Target Start/End: Original strand, 40445802 - 40446056
Alignment:
| Q |
144 |
ctttctactcttttacaaaaaattaatactccctcaaagcttaaatataagcnnnnnnn-tcaagtttggtaaaatcaaatataagcaaaattcaaatac |
242 |
Q |
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| T |
40445802 |
ctttctactcttttataaaaaattaatactccctcaaagcttaaatataagcaaaaaaaatcaagtttggtaaaatcaaatataagcaaaattcaaatac |
40445901 |
T |
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| Q |
243 |
tcaatgttcagtggagttcaaggattcttcagacacaggtggagatcagaatactcaatggaggattttggattgagactgcaataagtaaaaacctctg |
342 |
Q |
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| T |
40445902 |
tcaatgttcagtggagttcaaggtttcttcagacacaggtggagatcagaatactcaatggaggattttggattaagactgcaataagtaaaaacctctg |
40446001 |
T |
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| Q |
343 |
tatgtattaataaattgagcaacnnnnnnntctgatgttttacgggcatagtagt |
397 |
Q |
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| T |
40446002 |
tatgtattaataaattgagcaacaaaaaaatctgatggtttacaggcatagtagt |
40446056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 40445665 - 40445714
Alignment:
| Q |
7 |
tcgaagaaaatagtgcctgcttgtttttcattatctaccatctgcaatag |
56 |
Q |
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| T |
40445665 |
tcgaaaaatatagggcctgcttgtttttcatcatctaccatctgcaatag |
40445714 |
T |
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