View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5335_low_8 (Length: 387)
Name: NF5335_low_8
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 105 - 368
Target Start/End: Complemental strand, 43170640 - 43170377
Alignment:
| Q |
105 |
gtgtttgtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatttattagactggggtagaactg |
204 |
Q |
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| T |
43170640 |
gtgtttgtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatttattagattggggtagaactg |
43170541 |
T |
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| Q |
205 |
gtgtcctttccatagcactcaatgatacagttgttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcc |
304 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43170540 |
gtgtcctttccatagcactcaatgatatagttgttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcc |
43170441 |
T |
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| Q |
305 |
tatcacaagtgttagctgggagccagatggacacatttaagccattggtttcatgaattccatt |
368 |
Q |
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| T |
43170440 |
tatcacaagtgttagctggcagccagatggacacattttagccattggtttgatgaattccatt |
43170377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 105 - 368
Target Start/End: Original strand, 43217696 - 43217959
Alignment:
| Q |
105 |
gtgtttgtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatttattagactggggtagaactg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43217696 |
gtgtttgtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatttattagattggggtagaactg |
43217795 |
T |
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| Q |
205 |
gtgtcctttccatagcactcaatgatacagttgttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcc |
304 |
Q |
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| T |
43217796 |
gtgtcctttccatagcactcaatgatattgttgttctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcc |
43217895 |
T |
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| Q |
305 |
tatcacaagtgttagctgggagccagatggacacatttaagccattggtttcatgaattccatt |
368 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
43217896 |
tatcacaagtgttagctggcagccagatggacacattttagccattggtttgatgaattccatt |
43217959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 43217430 - 43217522
Alignment:
| Q |
1 |
cggtcgctacaaaaatttttcatgttgaaatcggtccatgtcgtagttgtaatattta-tttgtccattctacataccataaggactaatttt |
92 |
Q |
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|||||||||||||| || ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
43217430 |
cggtcgctacaaaatttgttcgtgttgaaatcggtccatgtcgtagttgtaatatttattttgtccattctacatacaataaggactaatttt |
43217522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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