View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5335_low_9 (Length: 385)
Name: NF5335_low_9
Description: NF5335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5335_low_9 |
 | |
|
| [»] chr4 (13 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 5887101 - 5886717
Alignment:
| Q |
1 |
aagacaggtaattaccaatatcatgcgggataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtattccttgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5887101 |
aagacaggtaattaccaatatcatgcgggataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtattccttgaat |
5887002 |
T |
|
| Q |
101 |
gtggttgttatgaaggtcaatatataaaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5887001 |
gtggttgttatgaaggtcaatatataaaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtattga |
5886902 |
T |
|
| Q |
201 |
agaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5886901 |
agaacttgtagtgtcaaaatccagttgggcagaactccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctag |
5886802 |
T |
|
| Q |
301 |
ggaaagttttcaagttgcaggatgccnnnnnnngacgttcaaaattgggaaaggttgtctgatcagcatttgcatcattctcaat |
385 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5886801 |
ggaaagttttcaagttgcaggatgccaaaaaaagacgttcaaaattgggaaaggttgtctgatcagcatttgcatcattctcaat |
5886717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 5612907 - 5613292
Alignment:
| Q |
1 |
aagacaggtaattaccaatatcatgcgggataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggta---ttccttg |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | ||||| ||||||||||| ||||||| |
|
|
| T |
5612907 |
aagacaggtaattaccaatatcatgcgggataacagagaatttgttggttgagtaatccaaatatctaatagattcagaaaaaacaggtattgttccttg |
5613006 |
T |
|
| Q |
98 |
aatgtggttgttatgaaggtcaatatataaaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtat |
197 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||| |||||||||| || | ||||||| ||||||||||||||||||||||||||||| | | |
|
|
| T |
5613007 |
aatttggttgttatgaaggtcaataagatgaaggttggaagtaatattttgcaaacaaccttccaactctgtgagaaaattgtgtgaaatattaagctgt |
5613106 |
T |
|
| Q |
198 |
tgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatc |
297 |
Q |
| |
|
| |||| ||||||| || ||||||| || |||| || ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5613107 |
tcaagactttgtagtttccaaatccaatttggcacaactccttgaatttggttggctgaaaggtctagattttccaatgttgattgatttctcaagaata |
5613206 |
T |
|
| Q |
298 |
tagggaaagttttcaagttgcaggatgccnnnnnnngacgttcaaaattgggaaaggttgtctgatcagcatttgcatcattctca |
383 |
Q |
| |
|
|||| |||||||||| ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5613207 |
taggaaaagttttcaggttgcaggatgccaaatgaagatattcaaaattgggaaaggcagtctgatcagcatttgcatcattctca |
5613292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 5895946 - 5895564
Alignment:
| Q |
1 |
aagacaggtaattaccaatatcatgcgggataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtatt---ccttg |
97 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||| | || | ||||| |||||||||||||| ||||| |
|
|
| T |
5895946 |
aagacaagtaattaccaatatcatgtgggataacagagaatttattggttgagtaatccaaatactgaataaattcaggaaaaacaggtattgttccttg |
5895847 |
T |
|
| Q |
98 |
aatgtggttgttatgaaggtc-aatatataaaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggta |
196 |
Q |
| |
|
||| ||||||||||||||||| |||| ||| |||||| || ||||||| |||| ||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
5895846 |
aatttggttgttatgaaggtctaatacccaaa----tggaagtaagattttgcaaagaaccttccaattctgtgagaaaattgtgtgaaatattaagttg |
5895751 |
T |
|
| Q |
197 |
ttgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaat |
296 |
Q |
| |
|
||||||| |||||| || ||||||| ||||||| ||||||||||||||||| ||| ||||||||| | |||||||||||||||||||||||| |
|
|
| T |
5895750 |
ttgaagactctgtagtttccaaatccaattgggcactgctccttgaatttggttatgtgaaaggtctagagatagcaatgttgattgatttctcaagaat |
5895651 |
T |
|
| Q |
297 |
ctagggaaagttttcaagttgcaggatgccnnnnnnngacgttcaaaattgggaaaggttgtctgatcagcatttgcatcattctca |
383 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
5895650 |
ctagggaaagttttcaagttgcaggatgataaataaagaagttcaaaattgggaaaggcagtctggtcagcatttgcatcattctca |
5895564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 5848885 - 5848557
Alignment:
| Q |
1 |
aagacaggtaattaccaatatcatgcgggataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtatt---ccttg |
97 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| ||||||| |||||||| ||||||||||| |||||| | ||||| ||||||||| || | ||||| |
|
|
| T |
5848885 |
aagacagataattaccaatatcatgtgggataccagagaaattgttggttgagtaatccaagcattcaatagattcaggaaaaacagatactgatccttg |
5848786 |
T |
|
| Q |
98 |
aatgtggttgttatgaaggtcaatatataaaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtat |
197 |
Q |
| |
|
| |||||||||||||||||||| | | ||||||||||| |||||||||| |||| ||||||| ||||||||||||||||| |||||||| || ||| |
|
|
| T |
5848785 |
tagttggttgttatgaaggtcaattaaaataaggttggaagtaatattttgcaaagaaccttccaattctgtgagaaaattgtatgaaatatcaa-gtag |
5848687 |
T |
|
| Q |
198 |
tg-aagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaat |
296 |
Q |
| |
|
|| |||| || |||| || ||||||| ||||| | | |||||||||||||||| ||| |||| ||||| ||||||||||||||| ||| |||| |
|
|
| T |
5848686 |
tgaaagactttttagtttccaaatccaattgggtaccactccttgaatttggttagctgaaaggtttagatatcccaatgttgattgatttttcaggaat |
5848587 |
T |
|
| Q |
297 |
ctagggaaagttttcaagttgcaggatgcc |
326 |
Q |
| |
|
||||||||||||| |||||||||||||||| |
|
|
| T |
5848586 |
ctagggaaagtttgcaagttgcaggatgcc |
5848557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 5604792 - 5605117
Alignment:
| Q |
1 |
aagacaggtaattaccaatatcatgcgggataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtat---tccttg |
97 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||| || ||||| || |||||||||||| || ||| | ||||| ||||||||||||| |||||| |
|
|
| T |
5604792 |
aagaaaggtaattgccaatatcatgtgggataacagaaaaattgtttgttgagtaatccaaaaatccaatagattcaggaaaaacaggtatgcatccttg |
5604891 |
T |
|
| Q |
98 |
aatgtggttgttatgaaggtcaa-tatataaaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggta |
196 |
Q |
| |
|
| ||||||||||||||||| | || ||| |||||| || ||||||| |||| ||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
5604892 |
tagttggttgttatgaaggtctactacccaaa----tggaagtaagattttgcaaagaaccttccaattctgtgagaaaattgtgtgaaatattaagcca |
5604987 |
T |
|
| Q |
197 |
ttgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaat |
296 |
Q |
| |
|
||||||| ||||||| || ||||||| || |||| | ||||||||| | ||||| ||| ||||||||| || |||||||||||||| |||||||| |
|
|
| T |
5604988 |
ttgaagactttgtagtttccaaatccaattcggcactactccttgaatgttgttatctgaaaggtctagagatatcaatgttgattgattcatcaagaat |
5605087 |
T |
|
| Q |
297 |
ctagggaaagttttcaagttgcaggatgcc |
326 |
Q |
| |
|
||||||||| ||| | ||||||||||||| |
|
|
| T |
5605088 |
ctagggaaactttgtatgttgcaggatgcc |
5605117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 326
Target Start/End: Complemental strand, 5539986 - 5539836
Alignment:
| Q |
176 |
attgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaat |
275 |
Q |
| |
|
|||||| |||| |||||||| ||||||| |||||| || | ||||||||||||| |||| |||||||| |||||||| ||||||||| || | ||| |
|
|
| T |
5539986 |
attgtgagaaacattaaggttttgaagattttgtagcttccatatccagttgggcactgttccatgaatttgattatttgaaaggtctagaatgttcaat |
5539887 |
T |
|
| Q |
276 |
gttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgcc |
326 |
Q |
| |
|
| |||| ||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
5539886 |
ctggatttgtttctcaagaaactagggaaagttttcaggttgcaggatgcc |
5539836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 3748291 - 3748613
Alignment:
| Q |
1 |
aagacaggtaattaccaatatcatgcgggataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtatt---ccttg |
97 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||| | ||| |||||||| ||||||| ||||| |
|
|
| T |
3748291 |
aagataggtaattaccaatatcttctgggataacagaaaatttgttggtagagtaatccaaatattcaacagatttaagaaaaaaaggtattggtccttg |
3748390 |
T |
|
| Q |
98 |
aatgtggttgttatgaaggtcaatatataaaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggtat |
197 |
Q |
| |
|
| | ||||||||||||||||| | | || ||||| | ||||||| ||| ||||||| | ||||||| |||||| ||||||||||| | |
|
|
| T |
3748391 |
cagtttgttgttatgaaggtcaagaatttcccagtaggaagtgagattttgcaaaggtccttccaaatgagtgagaagattgtgagaaatattaagagct |
3748490 |
T |
|
| Q |
198 |
tgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatc |
297 |
Q |
| |
|
| ||| | | ||| || ||| ||| || || | ||||||||||| ||||||| ||| |||||||| | ||| ||||||| || ||| ||||||| | |
|
|
| T |
3748491 |
tctagatatggcagtttccaaacccaatttggtactattccttgaatctggttatctgaaaggtctagttggatcaatgttgtatggtttatcaagaaac |
3748590 |
T |
|
| Q |
298 |
tagggaaagttttcaagttgcag |
320 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
3748591 |
taggaaaagttttcaagttgcag |
3748613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 5857442 - 5857767
Alignment:
| Q |
1 |
aagacaggtaattaccaatatcatgcgggataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtatt---ccttg |
97 |
Q |
| |
|
||||||||||||| |||||||| || | |||||| || |||||||| || |||||||||||||| ||| | ||| | |||||| |||||| || || |
|
|
| T |
5857442 |
aagacaggtaattgccaatatcttgtgagataactgaaaatttgtttgttgagtaatccaaataatcagaagatttagaaaaaactggtattgacccctg |
5857541 |
T |
|
| Q |
98 |
aatgtggttgttatgaaggtc-aatatataaaaggttggaagcaatattttgcgaagagccttccatttctgtgagaaaattgtgtgaaatattaaggta |
196 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||| |||||| || ||||||| || ||||||| || | | | ||||||| |||||||||||| |
|
|
| T |
5857542 |
aagttggttgttatgaaggtctaatatccaaa----tggaagtaagattttgcataggtccttccaagtcgataaaagaattgtgagaaatattaaggac |
5857637 |
T |
|
| Q |
197 |
ttgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaat |
296 |
Q |
| |
|
||||||| | ||||| || ||||||| || || | ||||| ||||| ||||||| ||| ||||||||| || | ||| | ||||| ||| ||||||| |
|
|
| T |
5857638 |
ttgaagatatggtagtttccaaatccaatttggtactattccatgaatctggttatctgaaaggtctagaatggtcaatctggattggtttatcaagaaa |
5857737 |
T |
|
| Q |
297 |
ctagggaaagttttcaagttgcaggatgcc |
326 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
5857738 |
ctagggatagttttcaagttgcaggatgcc |
5857767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 326
Target Start/End: Complemental strand, 5571808 - 5571699
Alignment:
| Q |
217 |
aaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagtt |
316 |
Q |
| |
|
||||||||||||| | ||||||||||| || |||| ||| ||||||||| || | ||| | |||| ||||||||||| |||||||||||||||| ||| |
|
|
| T |
5571808 |
aaatccagttgggaactattccttgaatctgattatgtgagaggtctagaatgctcaatctggatttgtttctcaagaaactagggaaagttttcaggtt |
5571709 |
T |
|
| Q |
317 |
gcaggatgcc |
326 |
Q |
| |
|
|||||||||| |
|
|
| T |
5571708 |
gcaggatgcc |
5571699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 156 - 326
Target Start/End: Original strand, 5558473 - 5558640
Alignment:
| Q |
156 |
ccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttg |
255 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||||| || | || |||| ||| |||||| ||||||| ||||||| | ||| |||||||||||| || |
|
|
| T |
5558473 |
ccttccaattcagtgagaaaattgtgagaaatattcagctgttcaaga-ctt--agtgtccaaatccaattgggcactactccgtgaatttggttagctg |
5558569 |
T |
|
| Q |
256 |
acaggtctagattgattaatgttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgcc |
326 |
Q |
| |
|
| |||||||||| || ||| | ||||| || ||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
5558570 |
aaaggtctagatggaataacatggattggttcatcaagaaattagggaaagttttcaagttgcaggttgcc |
5558640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 5564112 - 5564194
Alignment:
| Q |
10 |
aattaccaatatcatgcgggataacagagaatttgttggtcgagtaatccaaatattcaagatattcaagaaaaacaggtatt |
92 |
Q |
| |
|
||||||||||||| || ||||||||||| |||||||| | ||| |||||||||||| || ||||||||||||| |||||||| |
|
|
| T |
5564112 |
aattaccaatatcttgtgggataacagaaaatttgttcattgagcaatccaaatattgaacatattcaagaaaagcaggtatt |
5564194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 326
Target Start/End: Complemental strand, 5584056 - 5583906
Alignment:
| Q |
176 |
attgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttgacaggtctagattgattaat |
275 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||| | || ||||||||||||| | ||||||||||| || |||| ||| ||||||||| || | || |
|
|
| T |
5584056 |
attgtgagaaatattaaggctttgaagattttgaatcctccaaatccagttgggaactattccttgaatctgattatgtgagaggtctagaatgctaaaa |
5583957 |
T |
|
| Q |
276 |
gttgattgatttctcaagaatctagggaaagttttcaagttgcaggatgcc |
326 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
5583956 |
caggattagtttctcaagaaactagggaaagttttcaggttgcaggatgcc |
5583906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 5848538 - 5848498
Alignment:
| Q |
345 |
ttgggaaaggttgtctgatcagcatttgcatcattctcaat |
385 |
Q |
| |
|
|||||||||| |||||||||| || |||||||||||||||| |
|
|
| T |
5848538 |
ttgggaaaggctgtctgatcaacacttgcatcattctcaat |
5848498 |
T |
|
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 1482686 - 1482796
Alignment:
| Q |
156 |
ccttccatttctgtgagaaaattgtgtgaaatattaaggtattgaagaacttgtagtgtcaaaatccagttgggcagaattccttgaatttggttatttg |
255 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| | |||| | || |||| || ||||||| || || || ||||||||||||||| | || |
|
|
| T |
1482686 |
ccttccaattctgtgagaaaattgtgtgaaatattaagttcctgaatactttctagtttccaaatccaattaggaagtgctccttgaatttggttctctg |
1482785 |
T |
|
| Q |
256 |
acaggtctaga |
266 |
Q |
| |
|
| ||||||||| |
|
|
| T |
1482786 |
aaaggtctaga |
1482796 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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