View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5336-Insertion-1 (Length: 293)
Name: NF5336-Insertion-1
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5336-Insertion-1 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 293
Target Start/End: Complemental strand, 47698058 - 47697773
Alignment:
| Q |
8 |
ctgcagtgctgagagacactgttctatttagggaagtccatacactattgcacctatatccaaacaaatgatttatgctatttcgtttttcatttttaaa |
107 |
Q |
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| T |
47698058 |
ctgcagtgctgagagacactgttctatttagggaagtccatacactattgcacctatatccaaacaaatgatttatgctatttcgtttttcatttttaaa |
47697959 |
T |
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| Q |
108 |
atacttcacctctccatagagactgtacgtatatggttttctttcgtaacgcaagataatgtctacgagcctgatgggttcgtacacgccgttggatagt |
207 |
Q |
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| T |
47697958 |
atacttcacctctccatagagactgtacgtatatggttttctttcgtaacgcaagataatgtctacgagcctgataggttcgtacacgccgttggatagt |
47697859 |
T |
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| Q |
208 |
ttttgctgctacacttagtacttgagctcttcgggcatccagtccagccatctgacctgctcttagaaatacctttgttttcccaa |
293 |
Q |
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| T |
47697858 |
ttttgctgctacacttagtacttgagctcttcgggcatccagttcagccatctgacctgctcttagaaatacctttgttttcccaa |
47697773 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 112 - 293
Target Start/End: Original strand, 35825022 - 35825203
Alignment:
| Q |
112 |
ttcacctctccatagagactgtacgtatatggttttctttcgtaacgcaagataatgtctacgagcctgatgggttcgtacacgccgttggatagttttt |
211 |
Q |
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|||||||||||| |||||| || |||||||| |||||| | || |||||| ||||| | ||||| ||||||||||||| || |||||||| ||| |
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| T |
35825022 |
ttcacctctccaccaagactgcacatatatggtcttcttttgcaatgcaagaaaatgtttccgagcttgatgggttcgtatgtgctgttggataactttg |
35825121 |
T |
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| Q |
212 |
gctgctacacttagtacttgagctcttcgggcatccagtccagccatctgacctgctcttagaaatacctttgttttcccaa |
293 |
Q |
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| T |
35825122 |
gttgcattaccaagtacttgagctctctgagcatctagttcagccatctgacctgctctcaagaatacctttgtttttccaa |
35825203 |
T |
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