View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5336-Insertion-2 (Length: 610)
Name: NF5336-Insertion-2
Description: NF5336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5336-Insertion-2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 8 - 610
Target Start/End: Complemental strand, 25719797 - 25719197
Alignment:
| Q |
8 |
aaggaaacccttaagctgttgaagagctattgtgatggcagctccccccataaaaccgactattgcagcatgtgataggaaatcaatcaaaaatcctaac |
107 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25719797 |
aaggaaacccttaagttgttgaagagctattgtgatggcagctccccccataaaaccgactattgcagcatgtgataggaaatcaatcaaaaatcctaac |
25719698 |
T |
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| Q |
108 |
ctggttgaaatatccacccaattggcatgtcattagcataagagtttggtagcacatgtatagggc---attaacactatctatgtatagcaataaaatt |
204 |
Q |
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| T |
25719697 |
ctggttgaaatatccacccaattggtatgtcattagcataagagtttgttagcaaatgtatagggcggcattaacattagccatgta--gcaaaaacatt |
25719600 |
T |
|
| Q |
205 |
tctgattaaaggcgcat-aggtgcctaacaccgacactagtggttacatttcatcactttcattttcttaaattattaacagtgttgtgttcggtgtcct |
303 |
Q |
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|| |||||||||||| | |||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||||||||||| | |
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| T |
25719599 |
tcagattaaaggcgcgtcaggtgcctaataccgacactagtggttacattaaatcactttctttttcttaaattattaaaagcgttgtgttcgg----ca |
25719504 |
T |
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| Q |
304 |
tgtcaatatcagtgattcgtagaacaatattgctagaaaaattcaaaaataaactcgcctaaaatcaatgagtcatacctaaaaacgccaagagttgcct |
403 |
Q |
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|||| || | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25719503 |
tgtcgatgttagtgattcgtagaacaatattgctagaggaattcataaataaactcgcctaaaatcaatgagtcatacctaaaaacaccaagagttgcct |
25719404 |
T |
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| Q |
404 |
gtgtaatcccggcgaaaaacgttgcagtaaaagcaagtcttctatattctgttggatgtgtaatgggatcgatctcattctgtagtaaagtccccaacaa |
503 |
Q |
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| T |
25719403 |
gtgtaatcccagcgaaaaacgtggcagtaaaagcaagtcttctatattctgttggatgtgtattgggatcaatctcattctgtagtaaagtccccaacaa |
25719304 |
T |
|
| Q |
504 |
gagagaaaccacggccactggtcctatggcaatgtcgcgggaactacccatgacagcataaatcagtggtggaacaaagcttgaatctgtaaagggtaaa |
603 |
Q |
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||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25719303 |
gagagaaaccacggccactggccctatcgcaatgtcacgggaactacccatgacggcataaatcagtggtggaacaaagcttgaatctgtaaagcgtaaa |
25719204 |
T |
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| Q |
604 |
acaaaac |
610 |
Q |
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||||||| |
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| T |
25719203 |
acaaaac |
25719197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 7228368 - 7228331
Alignment:
| Q |
256 |
atcactttcattttcttaaattattaacagtgttgtgt |
293 |
Q |
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| T |
7228368 |
atcactttcattttcttaaattattatcagtgttgtgt |
7228331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 29587726 - 29587688
Alignment:
| Q |
243 |
gtggttacatttcatcactttcattttcttaaattatta |
281 |
Q |
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| T |
29587726 |
gtggttacatttaatcacttccattttcttaaattatta |
29587688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 378 - 596
Target Start/End: Complemental strand, 33298415 - 33298197
Alignment:
| Q |
378 |
atacctaaaaacgccaagagttgcctgtgtaatcccggcgaaaaacgttgcagtaaaagcaagtcttctatattctgttggatgtgtaatgggatcgatc |
477 |
Q |
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|||||| |||| ||||||||||| ||||||||||| || ||||| || || |||||||| || | || ||||||| || ||| |||| ||||| ||| |
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| T |
33298415 |
atacctgaaaatcccaagagttgcttgtgtaatcccagcaaaaaaagtggctgtaaaagccagacgtcgatattcttctgcatgcgtaacaggatcaatc |
33298316 |
T |
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| Q |
478 |
tcattctgtagtaaagtccccaacaagagagaaaccacggccactggtcctatggcaatgtcgcgggaactacccatgacagcataaatcagtggtggaa |
577 |
Q |
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| T |
33298315 |
tcattactaagcaatgtccccaacaagagagataccactgccactggtcctattgctatatcgcgagaactacccatgaaagcataaataagtggtggaa |
33298216 |
T |
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| Q |
578 |
caaagcttgaatctgtaaa |
596 |
Q |
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||||||| ||||||||||| |
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| T |
33298215 |
caaagctagaatctgtaaa |
33298197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 33298645 - 33298547
Alignment:
| Q |
8 |
aaggaaacccttaagctgttgaagagctattgtgatggcagctccccccataaaaccgactattgcagcatgtgataggaaatcaatcaaaaatcctaa |
106 |
Q |
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|||||||||||| ||||||||||| || |||||||| ||||| ||||||||||||||||| || |||||||| |||||||| |||||||| || ||||| |
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| T |
33298645 |
aaggaaaccctttagctgttgaagggcaattgtgatagcagcaccccccataaaaccgacaatagcagcatgggataggaagtcaatcaagaaccctaa |
33298547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 4240931 - 4240967
Alignment:
| Q |
247 |
ttacatttcatcactttcattttcttaaattattaac |
283 |
Q |
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| T |
4240931 |
ttacatttcatcactttcattttcttaaattattaac |
4240967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 16331027 - 16330989
Alignment:
| Q |
243 |
gtggttacatttcatcactttcattttcttaaattatta |
281 |
Q |
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|||||||||||| |||| ||||||||||||||||||||| |
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| T |
16331027 |
gtggttacatttaatcattttcattttcttaaattatta |
16330989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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